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AT3G12800.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
peroxisome 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31975158 (2020): plastid
  • PMID:31871212 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): cytosol None
  • PMID:31023727 (2019): mitochondrion
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:24130194 (2013): peroxisome
  • PMID:24124904 (2013): plastid
  • PMID:23750852 (2013): mitochondrion
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22550958 (2012): plastid
  • PMID:21311031 (2011): mitochondrion
  • PMID:20423899 (2010): plastid
  • PMID:19329564 (2009): peroxisome
  • PMID:18931141 (2008): peroxisome
  • PMID:17951448 (2007): peroxisome
  • PMID:17151019 (2007): plant-type vacuole
FP Images

Arabidopsis cell culture (peroxisomal marker)

At3g-GFP-12800
(full-length)
RFP-peroxisomal markeroverlay

Images by John Bussel
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : short-chain dehydrogenase-reductase B
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
short-chain dehydrogenase-reductase B (SDRB); FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: peroxisome, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT2G07640.1); Has 108804 Blast hits to 108592 proteins in 3545 species: Archae - 967; Bacteria - 72835; Metazoa - 4412; Fungi - 5364; Plants - 2598; Viruses - 2; Other Eukaryotes - 22626 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G12800-MONOMEREC:1.3.1.34eggNOG:COG1028eggNOG:KOG0725
EMBL:AB024033EMBL:AK175259EMBL:AK175900EMBL:AK176181
EMBL:AK176305EMBL:AK176508EMBL:AK176631EMBL:AK176776
EMBL:AK176892EMBL:AK176909EMBL:AK221326EMBL:AY072396
EMBL:AY114700EMBL:CP002686EnsemblPlants:AT3G12800EnsemblPlants:AT3G12800.1
entrez:820462ExpressionAtlas:Q0WMN4ExpressionAtlas:Q9LTV6Gene3D:3.40.50.720
GeneID:820462Genevisible:Q9LTV6GO:GO:0005774GO:GO:0005777
GO:GO:0006631GO:GO:0008670GO:GO:0016491Gramene:AT3G12800.1
hmmpanther:PTHR24322hmmpanther:PTHR24322:SF427InParanoid:Q9LTV6InterPro:IPR002347
InterPro:IPR016040KEGG:ath:AT3G12800KO:K13237OMA:ICFEIAA
PANTHER:PTHR24322PaxDb:Q9LTV6Pfam:PF00106Pfam:Q9LTV6
PhylomeDB:Q0WMN4PhylomeDB:Q9LTV6PRIDE:Q9LTV6PRINTS:PR00080
PRINTS:PR00081PRO:PR:Q9LTV6ProteinModelPortal:Q0WMN4ProteinModelPortal:Q9LTV6
Proteomes:UP000006548Reactome:R-ATH-535734RefSeq:NP_187886.2SMR:Q9LTV6
STRING:3702.AT3G12800.1SUPFAM:SSF51735TAIR:AT3G12800tair10-symbols:DECR
tair10-symbols:SDRBUniGene:At.47252UniProt:Q0WMN4UniProt:Q9LTV6
Coordinates (TAIR10) chr3:-:4063463..4064757
Molecular Weight (calculated) 31798.30 Da
IEP (calculated) 9.62
GRAVY (calculated) -0.11
Length 298 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSPFKPDVV RGQVALITGG GSGIGFEISS QFGKHGASIA IMGRRKQVLD DAVSALRSLG IQAIGLEGDV RKQEDARRVV EATFQHFGKL DILVNAAAGN
101: FLAAAEDLSP NGFRTVLDID AVGTFNMCHA ALKYLKKGAP GRDSSSGGGS IINISATLHY TASWYQIHVS AAKAAVDATT RNLALEWGTD YDIRVNGIAP
201: GPIGGTPGMS KLVPEEIENK TREYMPLYKV GEKWDIAMAA LYLSCDSGKY VSGLTMVVDG GLWLSKPRHL PKEAVKQLSR AVEKRSRAKP VGLPTSKL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)