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AT1G80230.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Rubredoxin-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Rubredoxin-like superfamily protein; FUNCTIONS IN: cytochrome-c oxidase activity; LOCATED IN: mitochondrial envelope, mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome c oxidase, subunit Vb (InterPro:IPR002124); BEST Arabidopsis thaliana protein match is: Rubredoxin-like superfamily protein (TAIR:AT3G15640.1); Has 455 Blast hits to 455 proteins in 164 species: Archae - 0; Bacteria - 0; Metazoa - 230; Fungi - 89; Plants - 94; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G80230-MONOMERBioCyc:MetaCyc:AT1G80230-MONOMEReggNOG:ENOG4111XEMeggNOG:KOG3352
EMBL:AC009322EMBL:AK227631EMBL:AY086953EMBL:BT006403
EMBL:CP002684EnsemblPlants:AT1G80230EnsemblPlants:AT1G80230.1entrez:844363
Gene3D:2.60.11.10GeneID:844363Genevisible:Q9SSB8GO:GO:0004129
GO:GO:0005739GO:GO:0005743GO:GO:0046872Gramene:AT1G80230.1
hmmpanther:PTHR10122hmmpanther:PTHR10122:SF3HOGENOM:HOG000184129InParanoid:Q9SSB8
InterPro:IPR002124KEGG:ath:AT1G80230KO:K02265OMA:MRIVGCP
PANTHER:PTHR10122PaxDb:Q9SSB8Pfam:PF01215Pfam:Q9SSB8
Pfscan:PS51359PhylomeDB:Q9SSB8PIR:H96833PRIDE:Q9SSB8
PRO:PR:Q9SSB8ProDom:PD007270PROSITE:PS51359ProteinModelPortal:Q9SSB8
Proteomes:UP000006548RefSeq:NP_178140.1SMR:Q9SSB8STRING:3702.AT1G80230.1
SUPFAM:SSF57802TAIR:AT1G80230UniGene:At.28001UniProt:Q9SSB8
Coordinates (TAIR10) chr1:-:30169784..30170999
Molecular Weight (calculated) 18583.90 Da
IEP (calculated) 5.54
GRAVY (calculated) -0.32
Length 171 amino acids
Sequence (TAIR10)
(BLAST)
001: MWRRIVSSHL KSISAVGSCA APSCRHAVVE STHLSLSTRA SSIPAYSSIF SRLIGSAAAD TAVKKRVEDV MPIATGHEKE ELQAELEGRK LDDIDFPEGP
101: FGTKEAPAVV KSYYDMRIVG CPGGEGEDEH DVVWFWLEKG KSFECPVCTQ YFKLEVVGPG GPPDGHGDDH H
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)