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AT1G24180.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31975158 (2020): plastid
  • PMID:31911558 (2020): mitochondrion
  • PMID:31871212 (2020): mitochondrion
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:27122571 (2016): mitochondrion
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:24727099 (2014): mitochondrion
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23750852 (2013): mitochondrion
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22923678 (2012): mitochondrion
  • PMID:22550958 (2012): plastid
  • PMID:22540835 (2012): mitochondrion
  • PMID:21896887 (2011): mitochondrion mitochondrial envelope mitochondrial outer membrane
  • PMID:21841088 (2011): mitochondrion
  • PMID:21472856 (2011): mitochondrion
  • PMID:21311031 (2011): mitochondrion
  • PMID:19688752 (2009): mitochondrion
  • PMID:19334764 (2009): plasma membrane
  • PMID:18385124 (2008): mitochondrion
  • PMID:14671022 (2004): mitochondrion
  • PMID:11743115 (2001): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Thiamin diphosphate-binding fold (THDP-binding) superfamily protein
Curator
Summary (TAIR10)
Arabidopsis thaliana pyruvate dehydrogenase E1a-like subunit. 81% identical to a previously characterized Arabidopsis mitochondrial PDH E1a-subunit, At1g59900
Computational
Description (TAIR10)
IAA-CONJUGATE-RESISTANT 4 (IAR4); FUNCTIONS IN: cobalt ion binding, pyruvate dehydrogenase (acetyl-transferring) activity, zinc ion binding; INVOLVED IN: response to salt stress, metabolic process; LOCATED IN: cytosol, mitochondrion, nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Dehydrogenase, E1 component (InterPro:IPR001017), Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit, subgroup y (InterPro:IPR017597); BEST Arabidopsis thaliana protein match is: pyruvate dehydrogenase complex E1 alpha subunit (TAIR:AT1G59900.1); Has 9959 Blast hits to 9956 proteins in 1842 species: Archae - 124; Bacteria - 6117; Metazoa - 560; Fungi - 255; Plants - 209; Viruses - 0; Other Eukaryotes - 2694 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G24180-MONOMERBioGrid:24269EC:1.2.4.1eggNOG:COG1071
eggNOG:KOG0225EMBL:AC002396EMBL:AF360215EMBL:AY051018
EMBL:AY088101EMBL:AY135561EMBL:CP002684EnsemblPlants:AT1G24180
EnsemblPlants:AT1G24180.1entrez:839031Gene3D:3.40.50.970GeneID:839031
Genevisible:Q8H1Y0GO:GO:0004739GO:GO:0005634GO:GO:0005739
GO:GO:0005759GO:GO:0005829GO:GO:0006086GO:GO:0006096
GO:GO:0008270GO:GO:0009651GO:GO:0050897Gramene:AT1G24180.1
gramene_pathway:1.2.4.1gramene_pathway:PYRUVDEHYD-PWYhmmpanther:PTHR11516hmmpanther:PTHR11516:SF40
HOGENOM:HOG000281336InParanoid:Q8H1Y0InterPro:IPR001017InterPro:IPR017597
InterPro:IPR029061iPTMnet:Q8H1Y0KEGG:00010+1.2.4.1KEGG:00020+1.2.4.1
KEGG:00620+1.2.4.1KEGG:ath:AT1G24180KO:K00161MINT:MINT-8063590
OMA:SREYCNAPaxDb:Q8H1Y0Pfam:PF00676Pfam:Q8H1Y0
PhylomeDB:Q8H1Y0PIR:T00648PRIDE:Q8H1Y0PRO:PR:Q8H1Y0
ProteinModelPortal:Q8H1Y0Proteomes:UP000006548Reactome:R-ATH-70268RefSeq:NP_173828.1
SMR:Q8H1Y0STRING:3702.AT1G24180.1SUPFAM:SSF52518TAIR:AT1G24180
tair10-symbols:IAR4TIGRfam:TIGR03182TIGRFAMs:TIGR03182UniGene:At.24830
UniProt:Q8H1Y0
Coordinates (TAIR10) chr1:-:8560777..8563382
Molecular Weight (calculated) 43360.90 Da
IEP (calculated) 8.02
GRAVY (calculated) -0.32
Length 393 amino acids
Sequence (TAIR10)
(BLAST)
001: MALSRLSSRS NTFLKPAITA LPSSIRRHVS TDSSPITIET AVPFTSHLCE SPSRSVETSS EEILAFFRDM ARMRRMEIAA DSLYKAKLIR GFCHLYDGQE
101: ALAVGMEAAI TKKDAIITSY RDHCTFIGRG GKLVDAFSEL MGRKTGCSHG KGGSMHFYKK DASFYGGHGI VGAQIPLGCG LAFAQKYNKD EAVTFALYGD
201: GAANQGQLFE ALNISALWDL PAILVCENNH YGMGTATWRS AKSPAYFKRG DYVPGLKVDG MDALAVKQAC KFAKEHALKN GPIILEMDTY RYHGHSMSDP
301: GSTYRTRDEI SGVRQVRDPI ERVRKLLLTH DIATEKELKD MEKEIRKEVD DAVAQAKESP IPDASELFTN MYVKDCGVES FGADRKELKV TLP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)