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AT2G17130.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31871212 (2020): mitochondrion
  • PMID:31818904 (2020): mitochondrion
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:27943495 (2017): mitochondrion
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:23750852 (2013): mitochondrion
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23444301 (2013): mitochondrion
  • PMID:23444301 (2013): mitochondrion mitochondrial matrix
  • PMID:22574745 (2012): mitochondrion
  • PMID:22550958 (2012): plastid
  • PMID:21896887 (2011): mitochondrion mitochondrial envelope mitochondrial outer membrane
  • PMID:21472856 (2011): mitochondrion
  • PMID:21311031 (2011): mitochondrion
  • PMID:14671022 (2004): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : isocitrate dehydrogenase subunit 2
Curator
Summary (TAIR10)
Encodes a regulatory subunit of the mitochondrially-localized NAD+- dependent isocitrate dehydrogenase.
Computational
Description (TAIR10)
isocitrate dehydrogenase subunit 2 (IDH2); FUNCTIONS IN: isocitrate dehydrogenase (NAD+) activity; INVOLVED IN: isocitrate metabolic process, tricarboxylic acid cycle, metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Isocitrate/isopropylmalate dehydrogenase (InterPro:IPR001804), Isocitrate dehydrogenase NAD-dependent, mitochondrial (InterPro:IPR004434); BEST Arabidopsis thaliana protein match is: isocitrate dehydrogenase 1 (TAIR:AT4G35260.1); Has 16085 Blast hits to 15952 proteins in 2729 species: Archae - 398; Bacteria - 9705; Metazoa - 617; Fungi - 814; Plants - 241; Viruses - 0; Other Eukaryotes - 4310 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1494-MONOMERBioCyc:MetaCyc:AT2G17130-MONOMERBioGrid:1575BRENDA:1.1.1.41
EC:1.1.1.41eggNOG:COG0473eggNOG:KOG0784EMBL:AK228337
EMBL:CP002685EMBL:U81994EnsemblPlants:AT2G17130EnsemblPlants:AT2G17130.1
entrez:816218ExpressionAtlas:P93032Gene3D:3.40.718.10GeneID:816218
Genevisible:P93032GO:GO:0000287GO:GO:0004449GO:GO:0005739
GO:GO:0006099GO:GO:0051287gramene_pathway:1.1.1.41gramene_pathway:PWY-5690
gramene_pathway:PWY-6549gramene_pathway:PWYQT-4481hmmpanther:PTHR11835hmmpanther:PTHR11835:SF51
HOGENOM:HOG000021113InParanoid:P93032InterPro:IPR001804InterPro:IPR004434
InterPro:IPR024084KEGG:00020+1.1.1.41KEGG:ath:AT2G17130KO:K00030
OMA:CAGPRHAPANTHER:PTHR11835PaxDb:P93032Pfam:P93032
Pfam:PF00180PhylomeDB:P93032PIR:D84548PRIDE:P93032
PRO:PR:P93032ProteinModelPortal:P93032Proteomes:UP000006548Reactome:R-ATH-71403
RefSeq:NP_179304.1RefSeq:NP_849963.1SMART:SM01329SMR:P93032
STRING:3702.AT2G17130.1SUPFAM:SSF53659TAIR:AT2G17130tair10-symbols:IDH-II
tair10-symbols:IDH2TIGRfam:TIGR00175TIGRFAMs:TIGR00175UniGene:At.12294
UniGene:At.48484UniProt:P93032
Coordinates (TAIR10) chr2:-:7461062..7462466
Molecular Weight (calculated) 39592.80 Da
IEP (calculated) 6.52
GRAVY (calculated) -0.08
Length 367 amino acids
Sequence (TAIR10)
(BLAST)
001: MSRQSFSLLK NLRSIASGSK IQTRSVTYMP RPGDGKPRPV TLIPGDGVGP LVTNAVQQVM EAMHAPVYFE PFEVHGDMKS LPEGLLESIK KNKVCLKGGL
101: KTPVGGGVSS LNVNLRKELD LFASLVNCFN LPGLASRHEN VDIVVIRENT EGEYAGLEHE VVPGVVESLK VITKFCSERI AKYAFEYAYL NNRKKVTAVH
201: KANIMKLADG LFLESCQEVA KKYPSIAYNE IIVDNCCMQL VARPEQFDVM VTPNLYGNLV ANTAAGIAGG TGVMPGGNVG AEYAVFEQGA SAGNVGKDTT
301: EEQKNANPVA LLLSSAMMLR HLQFPSFADR LETAVKRVIA EGNCRTEDLG GNSTTQEVVD AVIANLD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)