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AT3G09810.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:21896887 (2011): mitochondrion mitochondrial matrix
  • PMID:31911558 (2020): mitochondrion
  • PMID:31871212 (2020): mitochondrion
  • PMID:31818904 (2020): mitochondrion
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): cytosol None
  • PMID:31023727 (2019): mitochondrion
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:24727099 (2014): mitochondrion
  • PMID:23750852 (2013): mitochondrion
  • PMID:23444301 (2013): mitochondrion
  • PMID:23444301 (2013): mitochondrion mitochondrial matrix
  • PMID:22968828 (2012): mitochondrion
  • PMID:22574745 (2012): mitochondrion
  • PMID:22550958 (2012): plastid
  • PMID:21896887 (2011): mitochondrion mitochondrial envelope mitochondrial outer membrane
  • PMID:21841088 (2011): mitochondrion
  • PMID:21472856 (2011): mitochondrion
  • PMID:21311031 (2011): mitochondrion
  • PMID:14671022 (2004): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : isocitrate dehydrogenase VI
Curator
Summary (TAIR10)
Encodes a catalytic subunit of the mitochondrially-localized NAD+- dependent isocitrate dehydrogenase
Computational
Description (TAIR10)
isocitrate dehydrogenase VI (IDH-VI); CONTAINS InterPro DOMAIN/s: Isocitrate/isopropylmalate dehydrogenase (InterPro:IPR001804), Isocitrate dehydrogenase NAD-dependent, mitochondrial (InterPro:IPR004434), Isocitrate/isopropylmalate dehydrogenase, conserved site (InterPro:IPR019818); BEST Arabidopsis thaliana protein match is: isocitrate dehydrogenase V (TAIR:AT5G03290.1); Has 17175 Blast hits to 17053 proteins in 2733 species: Archae - 398; Bacteria - 9669; Metazoa - 935; Fungi - 952; Plants - 360; Viruses - 0; Other Eukaryotes - 4861 (source: NCBI BLink).
Protein Annotations
BRENDA:1.1.1.41EC:1.1.1.41eggNOG:COG0473eggNOG:KOG0785
EMBL:AC015985EMBL:AF324664EMBL:AF327427EMBL:AF339723
EMBL:AK176269EMBL:AK228113EMBL:AY084425EMBL:CP002686
EnsemblPlants:AT3G09810EnsemblPlants:AT3G09810.1entrez:820139Gene3D:3.40.718.10
GeneID:820139Genevisible:Q8LG77GO:GO:0000287GO:GO:0004449
GO:GO:0005739GO:GO:0006099GO:GO:0006102GO:GO:0051287
Gramene:AT3G09810.1gramene_pathway:1.1.1.41gramene_pathway:PWY-5690gramene_pathway:PWY-6549
gramene_pathway:PWYQT-4481hmmpanther:PTHR11835HOGENOM:HOG000021113InParanoid:Q8LG77
InterPro:IPR001804InterPro:IPR004434InterPro:IPR019818InterPro:IPR024084
KEGG:00020+1.1.1.41KEGG:ath:AT3G09810KO:K00030OMA:QCCDEVA
PANTHER:PTHR11835PaxDb:Q8LG77Pfam:PF00180Pfam:Q8LG77
PhylomeDB:Q8LG77PRIDE:Q8LG77PRO:PR:Q8LG77PROSITE:PS00470
ProteinModelPortal:Q8LG77Proteomes:UP000006548Reactome:R-ATH-71403RefSeq:NP_850549.1
scanprosite:PS00470SMART:SM01329SMR:Q8LG77STRING:3702.AT3G09810.1
SUPFAM:SSF53659TAIR:AT3G09810tair10-symbols:IDH-VITIGRfam:TIGR00175
TIGRFAMs:TIGR00175UniGene:At.22515UniProt:Q8LG77
Coordinates (TAIR10) chr3:+:3008753..3011070
Molecular Weight (calculated) 40578.10 Da
IEP (calculated) 7.19
GRAVY (calculated) 0.01
Length 374 amino acids
Sequence (TAIR10)
(BLAST)
001: MTMTAFLARR LIGNGSSQIL GTSSSSSGPF ISVSRAFFSS STPIKATLFP GDGIGPEIAE SVKQVFTAAD VVIDWDEQFV GTEVDPRTNS FLTWDNLQSV
101: LKNKVGLKGP MATPIGKGHR SLNLTLRKEL NLYANVRPCY SLPGYKTRYD DVDLITIREN TEGEYSGLEH QVVKGVVESL KIITRKASMR VAEYAFLYAK
201: THGRKKVSAI HKANIMQKTD GLFLQCCDEV AAKYPEIYYE KVVIDNCCMM LVKNPALFDV LVMPNLYGDI ISDLCAGLVG GLGLTPSMNI GEDGIALAEA
301: VHGSAPDIAG MNLANPTALL LSGVMMLRHL KLNKQAEQIH SAIINTIAEG KYRTADLGGS STTTDFTKAI CDHL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)