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AT1G74770.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : zinc ion binding
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
zinc ion binding; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Zinc finger, CTCHY-type (InterPro:IPR017921), Zinc finger, CHY-type (InterPro:IPR008913), Zinc finger, RING-type (InterPro:IPR001841), Haemerythrin/HHE cation-binding motif (InterPro:IPR012312); BEST Arabidopsis thaliana protein match is: zinc ion binding;zinc ion binding (TAIR:AT1G18910.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XXHFeggNOG:KOG1940EMBL:CP002684EnsemblPlants:AT1G74770
EnsemblPlants:AT1G74770.1entrez:843816Gene3D:2.20.28.10Gene3D:3.30.40.10
GeneID:843816GO:GO:0008270Gramene:AT1G74770.1hmmpanther:PTHR21319
hmmpanther:PTHR21319:SF17InParanoid:F4HVS0InterPro:IPR001841InterPro:IPR004039
InterPro:IPR008913InterPro:IPR012312InterPro:IPR013083InterPro:IPR017921
iPTMnet:F4HVS0KEGG:ath:AT1G74770OMA:CKSMHKLPaxDb:F4HVS0
Pfam:PF01814Pfam:PF05495Pfam:PF13639Pfam:PF14599
Pfscan:PS50089Pfscan:PS51266Pfscan:PS51270PRIDE:F4HVS0
PROSITE:PS50089PROSITE:PS51266PROSITE:PS51270ProteinModelPortal:F4HVS0
Proteomes:UP000006548RefSeq:NP_177615.2SMART:SM00184SMR:F4HVS0
STRING:3702.AT1G74770.1SUPFAM:0053828SUPFAM:0053829SUPFAM:SSF57850
TAIR:AT1G74770UniGene:At.34843UniProt:F4HVS0
Coordinates (TAIR10) chr1:-:28089695..28094834
Molecular Weight (calculated) 144930.00 Da
IEP (calculated) 6.61
GRAVY (calculated) -0.33
Length 1259 amino acids
Sequence (TAIR10)
(BLAST)
0001: MGGGNLHSLP PENASVSASY AVTVGNTKLS DAPVLFFVYC HKAFRAQLVE LRRFATDAAE ADSFSGDLAV ELSRKFEFLK LVYKYHSAAE DEVIFLALDK
0101: RVKNIVSNYS LEHAGTDDLF TSIFHWLHVL EEEIGSRSDV LREVILCIGT IQSSICQHML KEERQVFPLL IEKFSFREQA SLVWQFICSV PVMVLEDFLP
0201: WMISHLSHEE KIEVENCIKD VAPNEDSLQQ VISSWLLDDS QSSCGTPTEI MKGVQYVNVS KSLKKSPESH PSSGCFQRFW EWSKKSLSIP NVGRSPIHGL
0301: RLFQNAIEKD LRDIQEGLCQ AKFQTLILDL DVLMARLNFL ADVLVSYSNA FKKFFHPVLE EMTARRSSTA KQFNIDDCLE NFQRLLYKSA DDKTKTDNFL
0401: LQLQEELESL IIQVTKQFAI QRTEVFPIIS KNCNHEMQKQ LLYTSIHVLP LGLLKCVILW FSAHLSEEES QSILHFLSLE DSSPKKSFPR LLLQWLRFGY
0501: SGKTSVERFW KQLDVMFKVR CSCQKEHTEE ASGSFSNQTQ LQLCKVSKDV YPRKKDKSST CFMSMDLAVG DMYETPYSSR MNQQMTFSGK LKPPLHLPDF
0601: FGEKNMDDPM IMDVKPIDLL FFFHKAMKMD LDYLVCGSTR LAADFRFLAE FQQRFHMIKF LYQIHSDAED EIAFPALEAK GQLKNISHSF SIDHELETKH
0701: FDKVSFILNE MSELNMLVST INTTAADHDR KMKYERLCLS LREICKSMHK LLSEHIQHEE TELWGLFRNC FSIEEQEKII GCMLGRISGE ILQDMIPWLM
0801: ESLTSDEQLA AMSLWRQATR KTMFVEWLTE WYNGHVLQEE AGEANNDPFG DSDPLEIVWK YLFEASADGE KGSMRSSLLK LPKTNFTGIM NQPPPNYKVE
0901: VGKKEEKDLE RSESKKICRG SNQEGDKEQT DKMSQKVSQF GPSKKYEQLL TMSEEELVVV IKKISCDSSL DPQKKDYIKQ NLLMSRWNIS QRTYNLEPSS
1001: LSSNMETVHG QHPSYRDPHS LIFGCNHYKR NCKLLAPCCD KLFTCIRCHD EEADHSVDRK QITKMMCMKC LLIQPIGANC SNTSCKSSMG KYFCKICKLY
1101: DDERKIYHCP YCNLCRVGKG LGIDYFHCMK CNACMSRTLV EHVCREKCLE DNCPICHEYI FTSSSPVKAL PCGHLMHSTC FQEYTCSHYT CPVCSKSLGD
1201: MQVYFKMLDA LLAEEKMPDE YSNKTQVILC NDCGRKGNAP YHWLYHKCTT CGSYNSRLL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)