AT3G13950.1::SUBA5

AT3G13950.1

Subcellular Consensus
(Prediction and Experimental)

min:

:max

SUBAcon:
plasma membrane 0.897
What is SUBAcon?

Predictors

External Curations

no data

Experimental Localisations and PPI

FP	MS/MS	PPI
		PMID:24833385 (2014): AT5G47180.1:None: PMID:24833385 (2014): AT3G17000.1:None: PMID:24833385 (2014): AT1G17280.1:None: PMID:24833385 (2014): AT4G37680.1:None: PMID:24833385 (2014): AT4G30850.1:None: PMID:24833385 (2014): AT2G36305.1:None: PMID:24833385 (2014): AT5G06320.1:None: PMID:24833385 (2014): AT3G11530.1:None: PMID:24833385 (2014): AT1G47640.1:None: PMID:24833385 (2014): AT1G07860.1:None: PMID:24833385 (2014): AT5G03345.1:None: PMID:24833385 (2014): AT1G16170.1:None: PMID:24833385 (2014): AT3G25805.1:None: PMID:24833385 (2014): AT3G28220.1:None: PMID:24833385 (2014): AT2G28315.1:None: PMID:24833385 (2014): AT5G49540.1:None: PMID:24833385 (2014): AT1G14700.1:None: PMID:24833385 (2014): AT3G66654.1:None: PMID:24833385 (2014): AT1G34640.1:None: PMID:24833385 (2014): AT1G14020.1:None: PMID:24833385 (2014): AT4G17430.1:None: PMID:24833385 (2014): AT5G11890.1:None: PMID:24833385 (2014): AT3G48890.1:None: PMID:24833385 (2014): AT3G08930.1:None: PMID:24833385 (2014): AT4G01410.1:None: PMID:24833385 (2014): AT2G26180.1:None: PMID:24833385 (2014): AT1G70760.1:None:

SUBAcon links
AGI-AGI relationships

Coexpression

PPI

AT5G38900.1 plasma membrane [7.33]
AT1G65690.1 plasma membrane [6.78]
AT1G51890.1 plasma membrane [5.89]
AT2G13810.1 plastid [5.46]
AT5G13080.1 nucleus [5.42]
AT1G32350.1 mitochondrion [5.34]
AT2G43570.1 extracellular [5.32]
AT3G26210.1 plasma membrane [5.1]
AT4G04490.1 plasma membrane [5.04]
AT1G74590.1 plasma membrane [5.02]

AT1G07860.1 endoplasmic reticulum
AT5G47180.1 endoplasmic reticulum
AT5G03345.1 endoplasmic reticulum
AT1G47640.1 endoplasmic reticulum
AT2G36305.1 endoplasmic reticulum
AT3G17000.1 endoplasmic reticulum
AT3G48890.1 endoplasmic reticulum
AT1G14700.1 extracellular
AT1G34640.1 extracellular
AT3G08930.1 extracellular
AT1G14020.1 golgi
AT4G37680.1 golgi
AT4G30850.1 golgi
AT4G17430.1 golgi
AT3G66654.1 golgi
AT3G11530.1 golgi
AT1G17280.1 golgi
AT2G26180.1 nucleus
AT4G01410.1 plasma membrane
AT2G28315.1 plasma membrane
AT5G06320.1 plasma membrane
AT5G11890.1 plasma membrane
AT1G16170.1 plasma membrane
AT3G25805.1 plastid
AT1G70760.1 plastid
AT3G28220.1 vacuole
AT5G49540.1 vacuole

Description (TAIR10)

protein_coding :

Curator
Summary (TAIR10)

Computational
Description (TAIR10)

unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G13266.1); Has 339 Blast hits to 265 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 339; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

Protein Annotations

eggNOG:ENOG410JJFS	eggNOG:ENOG41115XZ	EMBL:AK317066	EMBL:CP002686
EnsemblPlants:AT3G13950	EnsemblPlants:AT3G13950.1	entrez:820608	GeneID:820608
GO:GO:0016021	Gramene:AT3G13950.1	hmmpanther:PTHR24177	hmmpanther:PTHR24177:SF17
HOGENOM:HOG000090026	InterPro:IPR026961	KEGG:ath:AT3G13950	OMA:GHRYEES
Pfam:PF13962	PhylomeDB:B9DG91	Proteomes:UP000006548	RefSeq:NP_188011.2
STRING:3702.AT3G13950.1	TAIR:AT3G13950	TMHMM:TMhelix	UniGene:At.39316
UniProt:B9DG91

Coordinates (TAIR10)

chr3:+:4604149..4605195

Molecular Weight (calculated)

23402.20 Da

IEP (calculated)

8.81

GRAVY (calculated)

0.56

Length

207 amino acids

Sequence (TAIR10)
(BLAST)

001: MEINGQEGHR YEESSSEWFV KYLKRQGDWL EKTRGNLMVT ATVIAGMSFQ VMVNPPGGVW QSDNCSFGNQ TGTAPFCKGR AGTAVLEYES SKRIAYIGMI
101: ISSTVSFSTS MSLILLVISG IRLRNRMIMA ILGTFMVVAV LCISAAFFFA IVLVQSDDQI IRYILLIYVG FWVVFPVLIL LIQLVRFIGW LICFMCCCCC
201: PRRRRFH