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AT4G32060.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : calcium-binding EF hand family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
calcium-binding EF hand family protein; FUNCTIONS IN: calcium ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); Has 1138 Blast hits to 1114 proteins in 164 species: Archae - 0; Bacteria - 0; Metazoa - 850; Fungi - 83; Plants - 103; Viruses - 0; Other Eukaryotes - 102 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410ZSC1eggNOG:KOG2643EMBL:AL021636EMBL:AL161580
EMBL:AY072163EMBL:AY122982EMBL:CP002687EnsemblPlants:AT4G32060
EnsemblPlants:AT4G32060.1entrez:829337ExpressionAtlas:Q9SZ45Gene3D:1.10.238.10
GeneID:829337GO:GO:0005509GO:GO:0005739GO:GO:0006816
GO:GO:0051562Gramene:AT4G32060.1hmmpanther:PTHR12294hmmpanther:PTHR12294:SF12
HOGENOM:HOG000006414InterPro:IPR002048InterPro:IPR011992InterPro:IPR018247
OMA:NPGELRCPfam:PF00036Pfam:PF13202Pfam:PF13833
Pfscan:PS50222PhylomeDB:Q9SZ45PIR:T04640PROSITE:PS00018
PROSITE:PS50222Proteomes:UP000006548RefSeq:NP_194934.1scanprosite:PS00018
SMART:SM00054SMR:Q9SZ45STRING:3702.AT4G32060.1SUPFAM:SSF47473
TAIR:AT4G32060UniGene:At.24296UniProt:Q9SZ45
Coordinates (TAIR10) chr4:+:15501134..15503321
Molecular Weight (calculated) 55418.10 Da
IEP (calculated) 8.64
GRAVY (calculated) -0.23
Length 498 amino acids
Sequence (TAIR10)
(BLAST)
001: MPALSHYRSV SSLPSVDRSF LLIQRLRIHG SSSSFPESSP SASILSGADP LKCTVSGGSL AKWITGISAG SALGFLYWSS GSSDSISGLF GGSNLLSFAD
101: SSTPSVCGVK VGDLKPRSFI PKLSLPGYSS GFIFGDAYRR KIFFNYEKRL RLQSPPEKVF EYFASVRTDK GEILMKPADL MRAIVPVFPP SESHLVREGY
201: LTGERNPGEL RCSPSEFFML FDVDNDGLIS FKEYIFFVTL LSIPESSFAV AFKMFDTDNN GEIDKEEFKT VMSLMRSQHR QGVGHRDGLR TGLHMTGSVE
301: DGGLVEYFFG KDGSQKLKHD KFTKFMKDLT EEMLRLEFAH YDYKRRGSIS AKDFALSMVA AADASHLSKL LDRVESLSEH PHLRDMRISL KEFKQFDELR
401: SKLGPFSLAL FAYGKANGLL TMKDFKRAAS QVCGITLSDN VIEIAFHVFD SNQDGNLSVD EFLRVLHRRE RDVAQPIAKG LSRYFSDGWK GSKNCSSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)