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AT5G48450.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
extracellular 0.500
plasma membrane 0.500
ASURE: extracellular,plasma membrane
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31541795 (2020): plasma membrane
  • PMID:22318864 (2012): plasma membrane
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21433285 (2011): plasma membrane
  • PMID:20843791 (2010): plasma membrane
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : SKU5 similar 3
Curator
Summary (TAIR10)
Encodes a protein with two DUF26 domains and a signal peptide for secretion. The protein is transported to the apoplast when it is expressed as a GFP fusion protein.
Computational
Description (TAIR10)
SKU5 similar 3 (sks3); FUNCTIONS IN: oxidoreductase activity, copper ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, type 3 (InterPro:IPR011707), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: Cupredoxin superfamily protein (TAIR:AT4G12420.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG2132eggNOG:KOG1263EMBL:CP002688EnsemblPlants:AT5G48450
EnsemblPlants:AT5G48450.1entrez:834900Gene3D:2.60.40.420GeneID:834900
GO:GO:0005507GO:GO:0016491Gramene:AT5G48450.1hmmpanther:PTHR11709
hmmpanther:PTHR11709:SF58InParanoid:F4K1P9InterPro:IPR001117InterPro:IPR008972
InterPro:IPR011706InterPro:IPR011707KEGG:ath:AT5G48450OMA:INGTFKG
PaxDb:F4K1P9Pfam:PF00394Pfam:PF07731Pfam:PF07732
PRIDE:F4K1P9ProteinModelPortal:F4K1P9Proteomes:UP000006548RefSeq:NP_199656.2
SMR:F4K1P9STRING:3702.AT5G48450.1SUPFAM:SSF49503TAIR:AT5G48450
tair10-symbols:sks3UniGene:At.55432UniProt:F4K1P9
Coordinates (TAIR10) chr5:-:19632791..19635612
Molecular Weight (calculated) 69097.10 Da
IEP (calculated) 9.18
GRAVY (calculated) -0.20
Length 621 amino acids
Sequence (TAIR10)
(BLAST)
001: MRCFPPPLWC TSLVVFLSVT GALAADPYVF FDWTVSYLSA SPLGTRQQVI GINGQFPGPI LNVTTNWNVV MNVKNNLDEP LLLTWNGIQH RKNSWQDGVL
101: GTNCPIPSGW NWTYEFQVKD QIGSFFYFPS TNFQRASGGY GGIIVNNRAI IPVPFALPDG DVTLFISDWY TKSHKKLRKD VESKNGLRPP DGIVINGFGP
201: FASNGSPFGT INVEPGRTYR FRVHNSGIAT SLNFRIQNHN LLLVETEGSY TIQQNYTNMD IHVGQSFSFL VTMDQSGSND YYIVASPRFA TSIKASGVAV
301: LRYSNSQGPA SGPLPDPPIE LDTFFSMNQA RSLRLNLSSG AARPNPQGSF KYGQITVTDV YVIVNRPPEM IEGRLRATLN GISYLPPATP LKLAQQYNIS
401: GVYKLDFPKR PMNRHPRVDT SVINGTFKGF VEIIFQNSDT TVKSYHLDGY AFFVVGMDFG LWTENSRSTY NKGDAVARST TQVFPGAWTA VLVSLDNAGM
501: WNLRIDNLAS WYLGQELYLS VVNPEIDIDS SENSVPKNSI YCGRLSPLQK DQAQRVNFSG SQRSIFVTSR GILLALFAIL VNINRLCNTK KILDSTAKAQ
601: TDLSLVETDR ISEKNRDRIS Y
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)