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AT2G13960.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : Homeodomain-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Homeodomain-like superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: chloroplast; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 3r-5 (TAIR:AT5G02320.2); Has 3753 Blast hits to 3002 proteins in 286 species: Archae - 0; Bacteria - 0; Metazoa - 850; Fungi - 374; Plants - 1226; Viruses - 6; Other Eukaryotes - 1297 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5147eggNOG:KOG0048EMBL:BT024758EMBL:CP002685
EnsemblPlants:AT2G13960EnsemblPlants:AT2G13960.1entrez:815880ExpressionAtlas:Q29PZ8
Gene3D:1.10.10.60GeneID:815880GO:GO:0003677GO:GO:0003700
GO:GO:0006355Gramene:AT2G13960.1hmmpanther:PTHR10641hmmpanther:PTHR10641:SF599
InterPro:IPR001005InterPro:IPR009057InterPro:IPR017930Pfam:PF00249
Pfscan:PS51294PhylomeDB:Q29PZ8PROSITE:PS51294Proteomes:UP000006548
RefSeq:NP_179013.2SMART:SM00717SMR:Q29PZ8STRING:3702.AT2G13960.1
SUPFAM:SSF46689TAIR:AT2G13960UniGene:At.64926UniProt:Q29PZ8
Coordinates (TAIR10) chr2:+:5859683..5861105
Molecular Weight (calculated) 17057.30 Da
IEP (calculated) 8.62
GRAVY (calculated) -0.65
Length 150 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSSSNPPVC SPEKEERSEM KIEIQCMENK QPLAASCSSA SEGSGCFFLK SPEIATPATV SSFPRRTSGP MRRAKGGWTP EEDETLRRAV EKYKGKRWKK
101: IAEFFPERTQ VQCLHRWQKV LNPELVKGPW TQEVLLSFSC SETFFGFHFT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)