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AT1G28580.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Predictors External Curations
AmiGO : vacuole 15539469
SwissProt : extracellular 16381842
TAIR : vacuole 15539469
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:15539469 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : GDSL-like Lipase/Acylhydrolase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: SGNH hydrolase-type esterase superfamily protein (TAIR:AT1G28570.1); Has 3549 Blast hits to 3495 proteins in 231 species: Archae - 0; Bacteria - 383; Metazoa - 0; Fungi - 5; Plants - 3148; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G28580-MONOMERBioCyc:ARA:GQT-59-MONOMEREC:3.1.1.-eggNOG:COG3240
eggNOG:ENOG410IKJ0EMBL:AC007508EMBL:AF361608EMBL:AY045814
EMBL:AY074841EMBL:AY079395EMBL:CP002684EnsemblPlants:AT1G28580
EnsemblPlants:AT1G28580.1entrez:839758Gene3D:3.40.50.1110GeneID:839758
Genevisible:Q9FXJ2GO:GO:0005576GO:GO:0005773GO:GO:0016042
GO:GO:0016788hmmpanther:PTHR22835hmmpanther:PTHR22835:SF189HOGENOM:HOG000237651
InParanoid:Q9FXJ2InterPro:IPR001087InterPro:IPR013830iPTMnet:Q9FXJ2
KEGG:ath:AT1G28580OMA:SETKCREPaxDb:Q9FXJ2Pfam:PF00657
Pfam:Q9FXJ2PhylomeDB:Q9FXJ2PIR:E86411PRIDE:Q9FXJ2
PRO:PR:Q9FXJ2ProteinModelPortal:Q9FXJ2Proteomes:UP000006548RefSeq:NP_174180.1
RefSeq:NP_973931.1SUPFAM:SSF52266TAIR:AT1G28580UniGene:At.19829
UniProt:Q9FXJ2
Coordinates (TAIR10) chr1:-:10044603..10046379
Molecular Weight (calculated) 43027.40 Da
IEP (calculated) 4.97
GRAVY (calculated) -0.05
Length 390 amino acids
Sequence (TAIR10)
(BLAST)
001: MAYPGSPILM KLLVFIFLST FVVTNVSSET KCREFKSIIS FGDSIADTGN LLGLSDPKDL PHMAFPPYGE NFFHHPTGRF SNGRLIIDFI AEFLGLPLVP
101: PFYGSHNANF EKGVNFAVGG ATALERSFLE DRGIHFPYTN VSLGVQLNSF KESLPSICGS PSDCRDMIEN ALILMGEIGG NDYNYAFFVD KGIEEIKELM
201: PLVITTISSA ITELIGMGGR TFLVPGEFPV GCSVLYLTSH QTSNMEEYDP LTGCLKWLNK FGENHGEQLR AELNRLQKLY PHVNIIYADY YNALFHLYQE
301: PAKFGFMNRP LSACCGAGGP YNYTVGRKCG TDIVESCDDP SKYVAWDGVH MTEAAYRLMA EGILNGPYAI PPFDWSCRSS GVKNSGSSDT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)