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AT4G01610.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22318864 (2012): plasma membrane
  • PMID:21166475 (2011): cytosol
  • PMID:21109274 (2011): extracellular region
  • PMID:16356755 (2006): extracellular region
  • PMID:15539469 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Cysteine proteinases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Cysteine proteinases superfamily protein; FUNCTIONS IN: cysteine-type endopeptidase activity, cysteine-type peptidase activity; INVOLVED IN: proteolysis, regulation of catalytic activity; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Peptidase C1A, cathepsin B (InterPro:IPR015643), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169), Peptidase C1A, propeptide (InterPro:IPR012599); BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT1G02305.1); Has 7486 Blast hits to 7443 proteins in 692 species: Archae - 63; Bacteria - 158; Metazoa - 3254; Fungi - 4; Plants - 1745; Viruses - 146; Other Eukaryotes - 2116 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G01610-MONOMEReggNOG:COG4870eggNOG:KOG1543EMBL:AF083797
EMBL:AF370193EMBL:AK175280EMBL:AK175481EMBL:AK175539
EMBL:AK176165EMBL:AK176244EMBL:AK176281EMBL:AK176330
EMBL:AK176416EMBL:AK176433EMBL:AK176487EMBL:AK221398
EMBL:AK230235EMBL:AY065167EMBL:AY086034EMBL:AY114015
EMBL:BT001190EMBL:CP002687EnsemblPlants:AT4G01610EnsemblPlants:AT4G01610.1
entrez:826792ExpressionAtlas:Q94K85GeneID:826792GO:GO:0004197
GO:GO:0005773GO:GO:0005829GO:GO:0050790Gramene:AT4G01610.1
hmmpanther:PTHR12411hmmpanther:PTHR12411:SF367HOGENOM:HOG000241341InterPro:IPR000169
InterPro:IPR000668InterPro:IPR012599InterPro:IPR013128InterPro:IPR025660
KEGG:ath:AT4G01610KO:K01363MEROPS:C01.144OMA:LACCGFR
PANTHER:PTHR12411Pfam:PF00112Pfam:PF08127PhylomeDB:Q94K85
PRINTS:PR00705PROSITE:PS00139PROSITE:PS00639Proteomes:UP000006548
RefSeq:NP_567215.1scanprosite:PS00139scanprosite:PS00639SMART:SM00645
SMR:Q94K85STRING:3702.AT4G01610.1SUPFAM:SSF54001TAIR:AT4G01610
UniGene:At.24471UniProt:Q94K85
Coordinates (TAIR10) chr4:+:694857..696937
Molecular Weight (calculated) 39419.60 Da
IEP (calculated) 6.09
GRAVY (calculated) -0.23
Length 359 amino acids
Sequence (TAIR10)
(BLAST)
001: MAVYNTKLCL ASVFLLLGLL LAFDLKGIEA ESLTKQKLDS KILQDEIVKK VNENPNAGWK AAINDRFSNA TVAEFKRLLG VKPTPKKHFL GVPIVSHDPS
101: LKLPKAFDAR TAWPQCTSIG NILDQGHCGS CWAFGAVESL SDRFCIQFGM NISLSVNDLL ACCGFRCGDG CDGGYPIAAW QYFSYSGVVT EECDPYFDNT
201: GCSHPGCEPA YPTPKCSRKC VSDNKLWSES KHYSVSTYTV KSNPQDIMAE VYKNGPVEVS FTVYEDFAHY KSGVYKHITG SNIGGHAVKL IGWGTSSEGE
301: DYWLMANQWN RGWGDDGYFM IRRGTNECGI EDEPVAGLPS SKNVFRVDTG SNDLPVASV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)