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AT4G11680.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.910
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:17151019 (2007): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Zinc finger, C3HC4 type (RING finger) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Zinc finger, C3HC4 type (RING finger) family protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: Zinc finger, C3HC4 type (RING finger) family protein (TAIR:AT1G12760.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
EC:6.3.2.-eggNOG:ENOG41121N2eggNOG:KOG0800EMBL:AL049500
EMBL:AL161532EMBL:AY057713EMBL:BT010750EMBL:CP002687
EMBL:DQ059121EnsemblPlants:AT4G11680EnsemblPlants:AT4G11680.1entrez:826773
Gene3D:3.30.40.10GeneID:826773GO:GO:0005774GO:GO:0008270
GO:GO:0016021GO:GO:0016567GO:GO:0016874Gramene:AT4G11680.1
hmmpanther:PTHR14155hmmpanther:PTHR14155:SF114HOGENOM:HOG000240958InParanoid:Q93Z92
InterPro:IPR001841InterPro:IPR013083iPTMnet:Q93Z92KEGG:ath:AT4G11680
OMA:PIHRSARPaxDb:Q93Z92Pfam:PF13639Pfam:Q93Z92
Pfscan:PS50089PhylomeDB:Q93Z92PIR:T04215PRIDE:Q93Z92
PRO:PR:Q93Z92PROSITE:PS50089ProteinModelPortal:Q93Z92Proteomes:UP000006548
RefSeq:NP_567379.1SMART:SM00184SMR:Q93Z92SUPFAM:SSF57850
TAIR:AT4G11680TMHMM:TMhelixUniGene:At.20734UniPathway:UPA00143
UniProt:Q93Z92
Coordinates (TAIR10) chr4:-:7053737..7055516
Molecular Weight (calculated) 43743.30 Da
IEP (calculated) 6.49
GRAVY (calculated) -0.13
Length 390 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSSSSTTTN TTTESDSSSL PTHIGRSNSD GIIDTTPFLP PTVTRTISVD EESNPIHRSA RRQGLREAAR FLRHAGSRRM MREPSMLVRE TAAEQLEERQ
101: SDWAYSKPVV FLDILWNLAF VAIGVAVLIL SRDEKPNMPL RVWVVGYGIQ CWLHMACVCV EYRRRRRRRH PEDGGGSGLT NSSSQQYVSL AQLEDRGETS
201: NPAKHLESAN TMFSFIWWII GFYWVSAGGQ TLSSDSPQLY WLCIIFLGFD VFFVVFCVAL ACVIGLAVCC CLPCIIAILY AVADQEGASK NDIDQMPKFR
301: FTKTGNVEKL SGKARGIMTE CGTDSPIERS LSPEDAECCI CLCEYEDGVE LRELPCNHHF HCTCIDKWLH INSRCPLCKF NILKNANNEV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)