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AT4G28220.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NAD(P)H dehydrogenase B1
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NAD(P)H dehydrogenase B1 (NDB1); FUNCTIONS IN: NADH dehydrogenase activity, disulfide oxidoreductase activity; INVOLVED IN: oxidation reduction; LOCATED IN: extrinsic to mitochondrial inner membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyridine nucleotide-disulphide oxidoreductase, class-II (InterPro:IPR000103), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), EF-Hand 1, calcium-binding site (InterPro:IPR018247), Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region (InterPro:IPR001327), EF-HAND 2 (InterPro:IPR018249); BEST Arabidopsis thaliana protein match is: NAD(P)H dehydrogenase B3 (TAIR:AT4G21490.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G28220-MONOMEREC:1.6.5.9eggNOG:COG1252eggNOG:KOG2495
EMBL:AL161572EMBL:AY086046EMBL:BT025339EMBL:CP002687
EnsemblPlants:AT4G28220EnsemblPlants:AT4G28220.1entrez:828937Gene3D:1.10.238.10
Gene3D:3.50.50.60GeneID:828937Genevisible:Q1JPL4GO:GO:0005509
GO:GO:0005739GO:GO:0005758GO:GO:0005777GO:GO:0016491
GO:GO:0031314GO:GO:0055114Gramene:AT4G28220.1hmmpanther:PTHR22912
hmmpanther:PTHR22912:SF180HOGENOM:HOG000182501InParanoid:Q1JPL4InterPro:IPR000103
InterPro:IPR002048InterPro:IPR011992InterPro:IPR018247InterPro:IPR023753
KEGG:ath:AT4G28220KO:K17871OMA:RVRECEGPaxDb:Q1JPL4
Pfam:PF07992Pfam:Q1JPL4Pfscan:PS50222PhylomeDB:Q1JPL4
PIR:T09038PRIDE:Q1JPL4PRINTS:PR00469PRO:PR:Q1JPL4
PROSITE:PS00018PROSITE:PS50222ProteinModelPortal:Q1JPL4Proteomes:UP000006548
RefSeq:NP_567801.1scanprosite:PS00018SMR:Q1JPL4STRING:3702.AT4G28220.1
SUPFAM:SSF47473SUPFAM:SSF51905SwissPalm:Q1JPL4TAIR:AT4G28220
tair10-symbols:NDB1UniGene:At.69904UniGene:At.71073UniProt:Q1JPL4
Coordinates (TAIR10) chr4:+:13993078..13995651
Molecular Weight (calculated) 63317.60 Da
IEP (calculated) 6.70
GRAVY (calculated) -0.22
Length 571 amino acids
Sequence (TAIR10)
(BLAST)
001: MTLLSSLGRA SRSAPLASKL LLLGTLSGGS IVAYADANEE ANKKEEHKKK KVVVLGTGWA GISFLKDLDI TSYDVQVVSP QNYFAFTPLL PSVTCGTVEA
101: RSIVESVRNI TKKKNGEIEL WEADCFKIDH VNQKVHCRPV FKDDPEASQE FSLGYDYLIV AVGAQVNTFG TPGVLENCHF LKEVEDAQRI RRGVIDCFEK
201: AILPGLTEEQ RRRKLHFVIV GGGPTGVEFA AELHDFIIED ITKIYPSVKE LVKITLIQSG DHILNTFDER ISSFAEQKFT RDGIDVQTGM RVMSVTDKDI
301: TVKVKSSGEL VSIPHGLILW STGVGTRPVI SDFMEQVGQG GRRAVATNEW LQVTGCENVY AVGDCASIAQ RKILGDIANI FKAADADNSG TLTMEELEGV
401: VDDIIVRYPQ VELYLKSKHM RHINDLLADS EGNARKEVDI EAFKLALSEA DSQMKTLPAT AQVAAQQGAY LAKCFNRMEQ CKELPEGPKR FRTGGHHQFR
501: PFQYKHFGQF APLGGDQAAA ELPGDWVSAG KSAQWLWYSV YASKQVSWRT RALVVSDWTR RYIFGRDSSR I
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)