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AT1G60810.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ATP-citrate lyase A-2
Curator
Summary (TAIR10)
One of the three genes encoding subunit A of the trimeric enzyme ATP Citrate lyase
Computational
Description (TAIR10)
ATP-citrate lyase A-2 (ACLA-2); CONTAINS InterPro DOMAIN/s: ATP-grasp fold, subdomain 2 (InterPro:IPR013816), ATP-grasp fold, succinyl-CoA synthetase-type (InterPro:IPR013650), Succinyl-CoA synthetase-like (InterPro:IPR016102); BEST Arabidopsis thaliana protein match is: ATP-citrate lyase A-1 (TAIR:AT1G10670.4); Has 5556 Blast hits to 5555 proteins in 1577 species: Archae - 133; Bacteria - 3078; Metazoa - 348; Fungi - 198; Plants - 97; Viruses - 0; Other Eukaryotes - 1702 (source: NCBI BLink).
Protein Annotations
BioGrid:27599DNASU:842375EC:2.3.3.8eggNOG:COG0045
eggNOG:KOG1254EMBL:AC002292EMBL:AC079675EMBL:AY081273
EMBL:AY128741EMBL:CP002684EnsemblPlants:AT1G60810EnsemblPlants:AT1G60810.1
entrez:842375Gene3D:3.30.470.20Gene3D:3.40.50.261GeneID:842375
Genevisible:O22718GO:GO:0003878GO:GO:0005524GO:GO:0005829
GO:GO:0006085GO:GO:0006629GO:GO:0009346Gramene:AT1G60810.1
gramene_pathway:2.3.3.8gramene_pathway:PWY-5172hmmpanther:PTHR23118HOGENOM:HOG000151490
InParanoid:O22718InterPro:IPR013650InterPro:IPR013816InterPro:IPR016102
InterPro:IPR032263KEGG:00020+2.3.3.8KEGG:00020+6.2.1.5KEGG:00640+6.2.1.5
KEGG:00660+6.2.1.5KEGG:00720+2.3.3.8KEGG:00720+6.2.1.5KEGG:ath:AT1G60810
KO:K01648OMA:VIMDPERPaxDb:O22718Pfam:O22718
Pfam:PF08442Pfam:PF16114PhylomeDB:O22718PIR:F96633
PRIDE:O22718PRO:PR:O22718ProteinModelPortal:O22718Proteomes:UP000006548
RefSeq:NP_176280.1SMR:O22718STRING:3702.AT1G60810.1SUPFAM:SSF52210
SUPFAM:SSF56059TAIR:AT1G60810tair10-symbols:ACLA-2UniGene:At.19214
UniGene:At.21738unipathway:UPA00223UniProt:O22718
Coordinates (TAIR10) chr1:-:22388691..22390993
Molecular Weight (calculated) 46762.30 Da
IEP (calculated) 4.91
GRAVY (calculated) -0.12
Length 423 amino acids
Sequence (TAIR10)
(BLAST)
001: MARKKIREYD SKRLVKEHFK RLSGQELPIR SVQINQETDL NELVEREPWL SSEKLVVKPD MLFGKRGKSG LVALNLDFAD VATFVKERLG KEVEMSGCKG
101: PITTFIVEPF VPHNEEFYLN IVSDRLGCSI SFSECGGIDI EENWDKVKTI TIPTGASLTF EICAPLVATL PLEIKGELED FIQVIFTLFE DLDFTFLEMN
201: PFTLVDGKPY PLDMRGELDD TAAFKNFKKW GDIEFPMPFG RVMSSTESFI HGLDEKTSAS LKFTVLNPKG RIWTMVAGGG ASVIYADTVG DLGYASELGN
301: YAEYSGAPKE DEVLQYARVV IDCATANPDG KSRALVIGGG IANFTDVAAT FNGIIRALKE KEAKLKAARM HIFVRRGGPN YQKGLAKMRS LGDEIGVPIE
401: VYGPEATMTG ICKEAIQYIT AAA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)