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AT3G54250.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : GHMP kinase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
GHMP kinase family protein; FUNCTIONS IN: diphosphomevalonate decarboxylase activity, kinase activity, ATP binding; INVOLVED IN: isoprenoid biosynthetic process, phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Diphosphomevalonate decarboxylase (InterPro:IPR005935), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), GHMP kinase (InterPro:IPR006204), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721); BEST Arabidopsis thaliana protein match is: mevalonate diphosphate decarboxylase 1 (TAIR:AT2G38700.1); Has 1522 Blast hits to 1521 proteins in 681 species: Archae - 55; Bacteria - 885; Metazoa - 122; Fungi - 149; Plants - 60; Viruses - 0; Other Eukaryotes - 251 (source: NCBI BLink).
Protein Annotations
EC:4.1.1.33eggNOG:COG3407eggNOG:KOG2833EMBL:AL132957
EMBL:AY087654EMBL:CP002686EnsemblPlants:AT3G54250EnsemblPlants:AT3G54250.1
entrez:824592Gene3D:3.30.230.10Gene3D:3.30.70.890GeneID:824592
GO:GO:0004163GO:GO:0005524GO:GO:0005777GO:GO:0005829
GO:GO:0016126GO:GO:0019287Gramene:AT3G54250.1gramene_pathway:4.1.1.33
gramene_pathway:PWY-922gramene_plant_reactome:1119615gramene_plant_reactome:6874759hmmpanther:PTHR10977
hmmpanther:PTHR10977:SF3InParanoid:F4JCU3InterPro:IPR005935InterPro:IPR006204
InterPro:IPR013750InterPro:IPR014721InterPro:IPR020568InterPro:IPR029765
KEGG:00900+4.1.1.33KEGG:ath:AT3G54250KO:K01597OMA:CTDSNQF
PANTHER:PTHR10977PaxDb:F4JCU3Pfam:PF00288PIR:T47584
PIRSF:PIRSF015950PRIDE:F4JCU3ProteinModelPortal:F4JCU3Proteomes:UP000006548
Reactome:R-ATH-191273Reactome:R-ATH-446199RefSeq:NP_566995.1SMR:F4JCU3
STRING:3702.AT3G54250.1SUPFAM:SSF54211SUPFAM:SSF55060TAIR:AT3G54250
TIGRfam:TIGR01240TIGRFAMs:TIGR01240UniGene:At.35127UniPathway:UPA00057
UniProt:F4JCU3
Coordinates (TAIR10) chr3:-:20082468..20084688
Molecular Weight (calculated) 46250.10 Da
IEP (calculated) 6.43
GRAVY (calculated) -0.29
Length 419 amino acids
Sequence (TAIR10)
(BLAST)
001: MATEKWVFMV TAQTPTNIAV IKYWGKRDEV RILPVNDSIS VTLDPDHLCT VTTVAVSPAF DRDRMWLNGK EISLSGSRYQ NCLREIRGRA GDVEDMEKGI
101: KIRKKDWEKL NLHIASHNNF PTAAGLASSA AGFACLVFSL AKLMNVDEDP SHLSAIARQG SGSACRSLFG GFVKWTMGSK EDGSDSVAVQ LADEKHWDDL
201: VIIIAVVSSR QKETSSTSGM RESVETSLLL QHRAKEVVPK RILQMEEAIK NRDFASFTQL TCTDSNQFHA VCLDTSPPIF YMNDTSHRII SLVEKWNRSE
301: GTPQVAYTFD AGPNAVLIAR NRKVAVQLLQ GLLYYFPPKS DTDMKSYVVG DNSILKEAGL DGASGVENLQ PPPEIKDNIG SQDQKGEVSY FICTRPGKGP
401: IVLHDQTQAL LDPETGLPK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)