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AT2G38700.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : mevalonate diphosphate decarboxylase 1
Curator
Summary (TAIR10)
Encodes mevalonate diphosphate decarboxylase, the enzyme that catalyzes the synthesis of isopentenyl diphosphate, used in sterol and isoprenoid biosynthesis. The protein appears to form a homodimeric complex. Incidentally, it was shown that the Arabidopsis MVD protein could also interact with its yeast homolog to form a heterodimer.
Computational
Description (TAIR10)
mevalonate diphosphate decarboxylase 1 (MVD1); CONTAINS InterPro DOMAIN/s: Diphosphomevalonate decarboxylase (InterPro:IPR005935), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), GHMP kinase (InterPro:IPR006204), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721); BEST Arabidopsis thaliana protein match is: GHMP kinase family protein (TAIR:AT3G54250.1); Has 1516 Blast hits to 1513 proteins in 678 species: Archae - 56; Bacteria - 877; Metazoa - 121; Fungi - 149; Plants - 60; Viruses - 0; Other Eukaryotes - 253 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G38700-MONOMERBioCyc:MetaCyc:AT2G38700-MONOMERBRENDA:4.1.1.33EC:4.1.1.33
eggNOG:COG3407eggNOG:KOG2833EMBL:AC005499EMBL:AK228357
EMBL:AY087442EMBL:BT008769EMBL:CP002685EMBL:Y14325
EMBL:Y17593EnsemblPlants:AT2G38700EnsemblPlants:AT2G38700.1entrez:818452
Gene3D:3.30.230.10Gene3D:3.30.70.890GeneID:818452GO:GO:0004163
GO:GO:0005524GO:GO:0005777GO:GO:0005829GO:GO:0016126
GO:GO:0019287Gramene:AT2G38700.1gramene_plant_reactome:1119615gramene_plant_reactome:6874759
hmmpanther:PTHR10977hmmpanther:PTHR10977:SF3HOGENOM:HOG000081923InterPro:IPR005935
InterPro:IPR006204InterPro:IPR013750InterPro:IPR014721InterPro:IPR020568
InterPro:IPR029765KEGG:00900+4.1.1.33KEGG:ath:AT2G38700KO:K01597
OMA:HFAVWHEPANTHER:PTHR10977Pfam:PF00288PhylomeDB:O23722
PIR:T52625PIRSF:PIRSF015950Proteomes:UP000006548Reactome:R-ATH-191273
Reactome:R-ATH-446199RefSeq:NP_181404.1SMR:O23722STRING:3702.AT2G38700.1
SUPFAM:SSF54211SUPFAM:SSF55060TAIR:AT2G38700tair10-symbols:ATMVD1
tair10-symbols:MVD1TIGRfam:TIGR01240TIGRFAMs:TIGR01240UniGene:At.24950
UniPathway:UPA00057UniProt:O23722
Coordinates (TAIR10) chr2:-:16180918..16183785
Molecular Weight (calculated) 45588.50 Da
IEP (calculated) 6.78
GRAVY (calculated) -0.28
Length 412 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEEKWVVMV TAQTPTNIAV IKYWGKRDEV RILPINDSIS VTLDPDHLCT LTTVAVSPSF DRDRMWLNGK EISLSGSRYQ NCLREIRSRA DDVEDKEKGI
101: KIAKKDWEKL HLHIASHNNF PTAAGLASSA AGFACLVFAL AKLMNVNEDP SQLSAIARQG SGSACRSLFG GFVKWNMGNK EDGSDSVAVQ LVDDKHWDDL
201: VIIIAVVSSR QKETSSTSGM RESVETSLLL QHRAKEVVPV RILQMEEAIK NRDFTSFTKL TCSDSNQFHA VCMDTSPPIF YMNDTSHRII SLVEKWNRSA
301: GTPEIAYTFD AGPNAVMIAR NRKVAVELLQ GLLYCFPPKP DTDMKSYVLG DTSIVKEAGL EGELPQGIKD KIGSQDQKGE VSYFICSRPG RGPVVLQDQT
401: QALLHPQTGL PK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)