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AT4G17740.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:20049866 (2010): plastid
  • PMID:16648217 (2006): plastid
  • PMID:14671022 (2004): mitochondrion
  • PMID:11719511 (2002): plastid
FP Images

Arabidopsis cell culture (plastidal marker)

At4g17740-GFP
(full-length)
plastidal marker-RFPoverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Peptidase S41 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Peptidase S41 family protein; FUNCTIONS IN: serine-type peptidase activity; INVOLVED IN: proteolysis, intracellular signaling pathway; LOCATED IN: thylakoid, thylakoid lumen, mitochondrion, chloroplast thylakoid lumen; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S41 (InterPro:IPR005151), PDZ/DHR/GLGF (InterPro:IPR001478), Peptidase S41A, C-terminal peptidase (InterPro:IPR004447); BEST Arabidopsis thaliana protein match is: Peptidase S41 family protein (TAIR:AT3G57680.1); Has 9204 Blast hits to 9194 proteins in 1993 species: Archae - 0; Bacteria - 5702; Metazoa - 14; Fungi - 0; Plants - 153; Viruses - 0; Other Eukaryotes - 3335 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G17740-MONOMERBioCyc:ARA:GQT-2541-MONOMEREC:3.4.21.102eggNOG:COG0793
eggNOG:ENOG410IEVIEMBL:AF424602EMBL:AJ132544EMBL:AL161547
EMBL:AY054171EMBL:BT006343EMBL:CP002687EMBL:Z97344
EnsemblPlants:AT4G17740EnsemblPlants:AT4G17740.1EnsemblPlants:AT4G17740.2entrez:827495
ExpressionAtlas:O23614Gene3D:2.30.42.10Gene3D:3.90.226.10GeneID:827495
Genevisible:O23614GO:GO:0005739GO:GO:0008236GO:GO:0009543
GO:GO:0009579GO:GO:0031977hmmpanther:PTHR32060hmmpanther:PTHR32060:SF7
HOGENOM:HOG000038766InParanoid:O23614IntAct:O23614InterPro:IPR001478
InterPro:IPR004447InterPro:IPR005151InterPro:IPR029045iPTMnet:O23614
KEGG:ath:AT4G17740MEROPS:S41.002OMA:VTVAKYEPaxDb:O23614
Pfam:O23614Pfam:PF00595Pfam:PF03572Pfscan:PS50106
PhylomeDB:O23614PIR:E71447PRIDE:O23614PRO:PR:O23614
PROSITE:PS50106ProteinModelPortal:O23614Proteomes:UP000006548RefSeq:NP_193509.1
RefSeq:NP_849401.1SMART:SM00228SMART:SM00245SMR:O23614
STRING:3702.AT4G17740.1SUPFAM:SSF50156SUPFAM:SSF52096TAIR:AT4G17740
TIGRfam:TIGR00225TIGRFAMs:TIGR00225UniGene:At.4498UniGene:At.54
UniProt:O23614
Coordinates (TAIR10) chr4:-:9867088..9869719
Molecular Weight (calculated) 55765.60 Da
IEP (calculated) 9.08
GRAVY (calculated) -0.17
Length 515 amino acids
Sequence (TAIR10)
(BLAST)
001: MEVLASSSLS PISFTKPNKI NPNFSIQVKL WVKQPPKISK ASKFSYARSR SNISRSNAAN PGVVFVCNRF LCVIERNDQR KLSGKVMMKS SVNFRQNLSV
101: ALVRIVSVLL VSSISVVTTD SPPSWGLTEE NLLFLEAWRT IDRAYIDKTF NGQSWFRYRE TALRNEPMNT REETYMAIKK MVATLDDPFT RFLEPGKFKS
201: LRSGTQGAVT GVGLSIGYPT ASDGPPAGLV VISAAPGGPA NRAGILPGDV IQGIDNTTTE TLTIYDAAQM LQGPEGSAVE LAIRSGPETR LLTLTRERVS
301: VNPVKSRLCE LPGSGSNSPK IGYIKLTTFN QNASSAVREA IETLRGNNVN AFVLDLRDNS GGSFPEGIEI AKFWLDKGVI VYICDSRGVR DIYDTDGSNA
401: IATSEPLAVL VNKGTASASE ILAGALKDNK RALVYGEPTY GKGKIQSVFE LSDGSGLAVT VARYETPAHT DIDKVGVTPD HPLPKSFPKD EEAFCGCLKD
501: PTAACYLNQG LLFSR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)