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AT3G28345.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plasma membrane 0.996
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30875866 (2019): plasma membrane
  • PMID:25402197 (2015): plastid plastid thylakoid plastid thylakoid membrane
  • PMID:20061580 (2010): plastid
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ABC transporter family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ABC transporter family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport, transmembrane transport; LOCATED IN: plasma membrane; EXPRESSED IN: shoot apex, inflorescence meristem, cotyledon, hypocotyl, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: P-glycoprotein 17 (TAIR:AT3G28380.1); Has 822177 Blast hits to 385706 proteins in 4160 species: Archae - 14477; Bacteria - 641696; Metazoa - 17642; Fungi - 12086; Plants - 9535; Viruses - 48; Other Eukaryotes - 126693 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G28345-MONOMEReggNOG:COG1132eggNOG:KOG0055EMBL:AB026644
EMBL:AP002051EMBL:CP002686EnsemblPlants:AT3G28345EnsemblPlants:AT3G28345.1
entrez:822463Gene3D:3.40.50.300GeneID:822463Genevisible:Q9LHD1
GO:GO:0005524GO:GO:0005886GO:GO:0016021GO:GO:0042626
GO:GO:0055085Gramene:AT3G28345.1hmmpanther:PTHR24221hmmpanther:PTHR24221:SF141
InParanoid:Q9LHD1InterPro:IPR003439InterPro:IPR003593InterPro:IPR011527
InterPro:IPR017871InterPro:IPR027417iPTMnet:Q9LHD1KEGG:ath:AT3G28345
KO:K05658OMA:TFMQSISPaxDb:Q9LHD1Pfam:PF00005
Pfam:PF00664Pfam:Q9LHD1Pfscan:PS50893Pfscan:PS50929
PhylomeDB:Q9LHD1PRIDE:Q9LHD1PRO:PR:Q9LHD1PROSITE:PS00211
PROSITE:PS50893PROSITE:PS50929ProteinModelPortal:Q9LHD1Proteomes:UP000006548
RefSeq:NP_189475.1scanprosite:PS00211SMART:SM00382SMR:Q9LHD1
STRING:3702.AT3G28345.1SUPFAM:SSF52540SUPFAM:SSF90123TAIR:AT3G28345
TMHMM:TMhelixUniGene:At.43730UniProt:Q9LHD1
Coordinates (TAIR10) chr3:-:10593921..10598775
Molecular Weight (calculated) 135649.00 Da
IEP (calculated) 8.17
GRAVY (calculated) 0.07
Length 1240 amino acids
Sequence (TAIR10)
(BLAST)
0001: MGKEEEKESG RNKMNCFGSV RSIFMHADGV DWLLMGLGLI GAVGDGFTTP LVLLITSKLM NNIGGSSFNT DTFMQSISKN SVALLYVACG SWVVCFLEGY
0101: CWTRTGERQT ARMREKYLRA VLRQDVGYFD LHVTSTSDVI TSVSSDSFVI QDVLSEKLPN FLMSASTFVG SYIVGFILLW RLAIVGLPFI VLLVIPGLMY
0201: GRALISISRK IREEYNEAGF VAEQAISSVR TVYAFSGERK TISKFSTALQ GSVKLGIKQG LAKGITIGSN GITFAMWGFM SWYGSRMVMY HGAQGGTVFA
0301: VAAAIAIGGV SLGGGLSNLK YFFEAASVGE RIMEVINRVP KIDSDNPDGH KLEKIRGEVE FKNVKFVYPS RLETSIFDDF CLRVPSGKTV ALVGGSGSGK
0401: STVISLLQRF YDPLAGEILI DGVSIDKLQV KWLRSQMGLV SQEPALFATT IKENILFGKE DASMDDVVEA AKASNAHNFI SQLPNGYETQ VGERGVQMSG
0501: GQKQRIAIAR AIIKSPTILL LDEATSALDS ESERVVQEAL ENASIGRTTI LIAHRLSTIR NADVISVVKN GHIVETGSHD ELMENIDGQY STLVHLQQIE
0601: KQDINVSVKI GPISDPSKDI RNSSRVSTLS RSSSANSVTG PSTIKNLSED NKPQLPSFKR LLAMNLPEWK QALYGCISAT LFGAIQPAYA YSLGSMVSVY
0701: FLTSHDEIKE KTRIYALSFV GLAVLSFLIN ISQHYNFAYM GEYLTKRIRE RMLSKVLTFE VGWFDRDENS SGAICSRLAK DANVVRSLVG DRMALVVQTV
0801: SAVTIAFTMG LVIAWRLALV MIAVQPVIIV CFYTRRVLLK SMSKKAIKAQ DESSKLAAEA VSNVRTITAF SSQERIMKML EKAQESPRRE SIRQSWFAGF
0901: GLAMSQSLTS CTWALDFWYG GRLIQDGYIT AKALFETFMI LVSTGRVIAD AGSMTTDLAK GSDAVGSVFA VLDRYTSIDP EDPDGYETER ITGQVEFLDV
1001: DFSYPTRPDV IIFKNFSIKI EEGKSTAIVG PSGSGKSTII GLIERFYDPL KGIVKIDGRD IRSYHLRSLR RHIALVSQEP TLFAGTIREN IIYGGVSDKI
1101: DEAEIIEAAK AANAHDFITS LTEGYDTYCG DRGVQLSGGQ KQRIAIARAV LKNPSVLLLD EATSALDSQS ERVVQDALER VMVGRTSVVI AHRLSTIQNC
1201: DAIAVLDKGK LVERGTHSSL LSKGPTGIYF SLVSLQTTSG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)