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AT4G39160.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Homeodomain-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Homeodomain-like superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), SANT, eukarya (InterPro:IPR017884); Has 3122 Blast hits to 2429 proteins in 310 species: Archae - 4; Bacteria - 140; Metazoa - 1075; Fungi - 294; Plants - 127; Viruses - 23; Other Eukaryotes - 1459 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5118eggNOG:KOG2009EMBL:AJ630489EMBL:AY568661
EMBL:BT023441EMBL:CP002687EnsemblPlants:AT4G39160EnsemblPlants:AT4G39160.1
entrez:830071ExpressionAtlas:Q700D6Gene3D:1.10.10.60GeneID:830071
GO:GO:0000126GO:GO:0001026GO:GO:0003677Gramene:AT4G39160.1
hmmpanther:PTHR22929HOGENOM:HOG000143668InterPro:IPR001005InterPro:IPR009057
InterPro:IPR017884InterPro:IPR030701ncoils:CoilPANTHER:PTHR22929
Pfam:PF15963Pfscan:PS51293PROSITE:PS51293Proteomes:UP000006548
RefSeq:NP_195627.2SMART:SM00717STRING:3702.AT4G39160.2SUPFAM:SSF46689
TAIR:AT4G39160UniGene:At.31114UniProt:Q700D6
Coordinates (TAIR10) chr4:+:18236828..18239744
Molecular Weight (calculated) 67318.60 Da
IEP (calculated) 4.36
GRAVY (calculated) -1.15
Length 601 amino acids
Sequence (TAIR10)
(BLAST)
001: MDLDFDDQPS DHAAPAVRAG ARFKPKGRPQ PKKKQVSLST TQTTLSPDVA QEKLSTQSED LVPLDGSSEI PSNALPSETN VPDSGSINKS TIGTLSEENE
101: DAFPRGVHWS VKPSILRACN NVNLVGNRRD DGIEATTSFP DDPRTQDSAI FGDYVTPETG ADEGRVDMET LDIVQEEGTT SSYVQHTGKL QPKPRLLETV
201: VEEPEPHYSA GDTGYFPMGT NESEFMANVE SRNGFSTYED LQEEELNIPE APRETVGEME AQNASGGWEQ EEQGVSPCIN NTVTGEEENC MGNTVEEQSK
301: RESKTGKSKR ATSRKRKKTS EEPNKSSEKT EQKKFKHSSR RQKRTLEKEL LETPDHEIRS LPLRDMLRLV EYKEWMQKKE AKGAGVQPSQ ESNNMNGSGS
401: QYHSQGFDEE DEFGDFGIES SEYQENNVVK PDSPVNYQTY MNKTSRTRWS KEDTELFYEG IQEFGSNLSM IQQLFPERTR EQMKLKFKLE ERRNPLKLND
501: ALSSRSKHFT HFKNVIKKLQ QEAAAAKEGE EEEEAGAEAE TTDVPENEEP EKSEETERAS DGVAAGVKES DGGDVENGVR SDGGDECDDD EDFWNSYKSD
601: M
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)