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AT4G33060.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.964
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site (InterPro:IPR020892); BEST Arabidopsis thaliana protein match is: cyclophilin71 (TAIR:AT3G44600.1); Has 24116 Blast hits to 22276 proteins in 2786 species: Archae - 119; Bacteria - 7703; Metazoa - 5717; Fungi - 2149; Plants - 1502; Viruses - 35; Other Eukaryotes - 6891 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G33060-MONOMERBioGrid:14728EC:5.2.1.8eggNOG:COG0652
eggNOG:KOG0885EMBL:AK227277EMBL:AL031804EMBL:AL161582
EMBL:AY568525EMBL:BT025329EMBL:CP002687EnsemblPlants:AT4G33060
EnsemblPlants:AT4G33060.1entrez:829443Gene3D:2.40.100.10GeneID:829443
Genevisible:Q6Q152GO:GO:0003755GO:GO:0005634GO:GO:0005737
GO:GO:0006457GO:GO:0009506GO:GO:0042277hmmpanther:PTHR11071
hmmpanther:PTHR11071:SF152HOGENOM:HOG000161443InParanoid:Q6Q152InterPro:IPR002130
InterPro:IPR020892InterPro:IPR024936InterPro:IPR029000iPTMnet:Q6Q152
KEGG:ath:AT4G33060KO:K12737ncoils:CoilOMA:FNRMQAK
PANTHER:PTHR11071PaxDb:Q6Q152Pfam:PF00160Pfam:Q6Q152
Pfscan:PS50072PhylomeDB:Q6Q152PIR:T05314PRIDE:Q6Q152
PRINTS:PR00153PRO:PR:Q6Q152PROSITE:PS00170PROSITE:PS50072
ProteinModelPortal:Q6Q152Proteomes:UP000006548RefSeq:NP_195032.2scanprosite:PS00170
SMR:Q6Q152STRING:3702.AT4G33060.1SUPFAM:SSF50891TAIR:AT4G33060
UniGene:At.31613UniProt:Q6Q152
Coordinates (TAIR10) chr4:+:15948535..15951954
Molecular Weight (calculated) 56517.50 Da
IEP (calculated) 7.72
GRAVY (calculated) -0.87
Length 504 amino acids
Sequence (TAIR10)
(BLAST)
001: MSTVYVLEPP TKGKVIVNTT HGPIDVELWP KEAPKSVRNF VQLCLEGYFD NTIFHRVIPG FLVQGGDPTG SGTGGDSIYG GVFADEFHSR LRFSHRGIVA
101: MANASSPNSN GSQFFFTLDK CDWLDKKHTI FGKVTGDSIY NLLRLGEVDT SKDDRPLDPA PKILSVEVLW NPFEDIVPRV LAKTSEESAA EIKEPPTKPV
201: KKLNLLSFGE EAEEEEKELA VVKQKIKSSH DVLNDPRLLK AEASDKERNA SESKEVLSVR EALNAKKEAA QKDKSFSVSD TVGNSDDDDD GEDETKFDAK
301: MRNQVLSRRK EIGDTPSKPT QKKKSSSLKG REESTQRSDA VSSEDEKPRM EKLSLKKKGI GSEAKAEHME KGDTDLQLYN ASERARQLHK LKKRRLQGNE
401: DSVLAKLEKF KQSISAKPFT SSNEPVVLTS SSEPVDNKEE DLSDWKNVKL KFAPERGKDK MSRRDDPDAY MVVDPLLEKG KEKFNRMQAK QKRREREWSG
501: KSLA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)