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AT1G01930.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : zinc finger protein-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
zinc finger protein-related; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); Has 1975 Blast hits to 1659 proteins in 367 species: Archae - 3; Bacteria - 303; Metazoa - 582; Fungi - 382; Plants - 105; Viruses - 11; Other Eukaryotes - 589 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQAGeggNOG:KOG2505EMBL:AC020622EMBL:AK118715
EMBL:BT006115EMBL:CP002684EnsemblPlants:AT1G01930EnsemblPlants:AT1G01930.1
entrez:839310Gene3D:1.25.40.20GeneID:839310Gramene:AT1G01930.1
hmmpanther:PTHR16036hmmpanther:PTHR16036:SF2InterPro:IPR002110InterPro:IPR020683
KEGG:ath:AT1G01930ncoils:CoilOMA:IRRPTFKPfscan:PS50088
Pfscan:PS50297PhylomeDB:Q9LPC8PIR:B86151PROSITE:PS50088
PROSITE:PS50297Proteomes:UP000006548RefSeq:NP_563641.1STRING:3702.AT1G01930.1
SUPFAM:SSF48403SUPFAM:SSF57667TAIR:AT1G01930UniGene:At.42628
UniProt:Q9LPC8
Coordinates (TAIR10) chr1:-:320041..322809
Molecular Weight (calculated) 65263.50 Da
IEP (calculated) 7.11
GRAVY (calculated) -0.76
Length 580 amino acids
Sequence (TAIR10)
(BLAST)
001: MATTGAAATT EIGNPEYKQP RSIFDLTADF FDSCRLSNPS ETQSAFGPPK TFDPEEAEED KSSKDGVILD RWTCNTCKIE FLSLQDQRYH FKSDIHRLNI
101: KLSVAGKAIL KEEDVDELTS ESVQDYDVSS ISGSEDEAET RPPSFHFDAQ KGIDKKKLFF RLQSGDKVSI WKCLIMDDAE SVSFENDRGV SVDCCGSLVE
201: NEVTERLRNL IRENKDDRQM RVVLLASGGH FAGTVFNGKS VVAHKTFHRY VVRAKAGKKQ STKDASGRSI HSAGASLRRY NELALKKDIQ ELLASWKPYF
301: DGAACVFVHA PSSSRQLLFN GGKPYFSSQN CAVRNVPFTI RRPTFKESQR IYNQLTQIAH VTEEIFVNRP EVTKANTVVQ THNEDSGKTS RKEEPDETSS
401: SNIILEEPNR IEEDIEDGVT GTSTALHEAA KSGDCERVME FLEEGMDPCA KDERGRTPYM LANEKEVRNT FRRFMALNLE KWNWHDAKVP SPLTKEMEES
501: QAAKQAEKDA KQKARTKELK KLRKAREKKA QAEAAQAEKE KPISKVEEVR RAMAAQREKR AAAAERRMAS LNIQSSSSTS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)