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AT5G52440.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Bacterial sec-independent translocation protein mttA/Hcf106
Curator
Summary (TAIR10)
HCF106; nuclear gene for chloroplast. Thylakoid membrane delta pH translocation pathway component protein; related to Escherichia coli TatA and TatB
Computational
Description (TAIR10)
HIGH CHLOROPHYLL FLUORESCENCE 106 (HCF106); FUNCTIONS IN: proton motive force dependent protein transmembrane transporter activity; INVOLVED IN: protein import into chloroplast thylakoid membrane; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bacterial sec-independent translocation protein mttA/Hcf106 (InterPro:IPR003369), Twin-arginine translocation protein TatA/E (InterPro:IPR006312); BEST Arabidopsis thaliana protein match is: Bacterial sec-independent translocation protein mttA/Hcf106 (TAIR:AT5G28750.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:20565eggNOG:ENOG410IYN7eggNOG:ENOG41122QHEMBL:AB019226
EMBL:AF139188EMBL:AK118733EMBL:BT005414EMBL:CP002688
EnsemblPlants:AT5G52440EnsemblPlants:AT5G52440.1entrez:835320GeneID:835320
Genevisible:Q9XH75GO:GO:0009306GO:GO:0009507GO:GO:0009534
GO:GO:0009535GO:GO:0009579GO:GO:0009941GO:GO:0009977
GO:GO:0016021GO:GO:0033281GO:GO:0045038Gramene:AT5G52440.1
hmmpanther:PTHR33162hmmpanther:PTHR33162:SF3HOGENOM:HOG000084156InParanoid:Q9XH75
InterPro:IPR003369InterPro:IPR006312KEGG:ath:AT5G52440OMA:STPNVYN
PaxDb:Q9XH75Pfam:PF02416Pfam:Q9XH75PhylomeDB:Q9XH75
PRIDE:Q9XH75PRO:PR:Q9XH75ProteinModelPortal:Q9XH75Proteomes:UP000006548
RefSeq:NP_200057.1SMR:Q9XH75STRING:3702.AT5G52440.1TAIR:AT5G52440
tair10-symbols:HCF106TCDB:2.A.64.2.1TIGRfam:TIGR01411TIGRFAMs:TIGR01411
TMHMM:TMhelixUniGene:At.22618UniGene:At.63900UniProt:Q9XH75
Coordinates (TAIR10) chr5:+:21286896..21288613
Molecular Weight (calculated) 28233.30 Da
IEP (calculated) 9.31
GRAVY (calculated) -0.60
Length 260 amino acids
Sequence (TAIR10)
(BLAST)
001: MAMALQIIAS SSSSPTITKS HLFSYPPLQS RYKASKPNLS SWFSLLGSSR FSPYIGLKHL GISISPKSSN PEKKRRCKSM MIRASLFGVG APEALVIGVV
101: ALLVFGPKGL AEVARNLGKT LRTFQPTIRE LQDVSRDFKS TLEREIGLDD ISTPNVYNQN RTNPVQPPPP PPPPSVPSTE APVTANDPND SQSPKAYTSE
201: DYLKFTEEQL KALSPAESQT EDQTQTQEPP QPTTVQTPTG ESQPNGTARE TTAASPPRQD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)