suba logo
AT1G28960.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:27943495 (2017): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : nudix hydrolase homolog 15
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
nudix hydrolase homolog 15 (NUDX15); CONTAINS InterPro DOMAIN/s: NUDIX hydrolase domain-like (InterPro:IPR015797), NUDIX hydrolase domain (InterPro:IPR000086), NUDIX hydrolase, AtNUDT22 (InterPro:IPR017397); BEST Arabidopsis thaliana protein match is: nudix hydrolase homolog 22 (TAIR:AT2G33980.1); Has 3635 Blast hits to 3634 proteins in 1300 species: Archae - 59; Bacteria - 2277; Metazoa - 167; Fungi - 181; Plants - 103; Viruses - 0; Other Eukaryotes - 848 (source: NCBI BLink).
Protein Annotations
EC:3.6.1.-eggNOG:COG0494eggNOG:KOG3069EMBL:AC007508
EMBL:AK117752EMBL:AK175332EMBL:AK176465EMBL:AK221329
EMBL:AK228486EMBL:AK230433EMBL:AK317052EMBL:CP002684
EnsemblPlants:AT1G28960EnsemblPlants:AT1G28960.1EnsemblPlants:AT1G28960.2EnsemblPlants:AT1G28960.3
EnsemblPlants:AT1G28960.4EnsemblPlants:AT1G28960.5entrez:839773Gene3D:3.90.79.10
GeneID:839773Genevisible:Q8GYB1GO:GO:0005739GO:GO:0006104
GO:GO:0006753GO:GO:0008893GO:GO:0010945GO:GO:0015937
GO:GO:0016787GO:GO:0046872hmmpanther:PTHR12992hmmpanther:PTHR12992:SF7
HOGENOM:HOG000250455InterPro:IPR000086InterPro:IPR015797InterPro:IPR030674
KEGG:00230+3.6.1.-KEGG:00332+3.6.1.-KEGG:00790+3.6.1.-KEGG:ath:AT1G28960
OMA:EKYLIHYPaxDb:Q8GYB1Pfam:PF00293Pfam:Q8GYB1
Pfscan:PS51462PhylomeDB:Q8GYB1PIRSF:PIRSF038132PRIDE:Q8GYB1
PRO:PR:Q8GYB1PROSITE:PS51462ProteinModelPortal:Q8GYB1Proteomes:UP000006548
RefSeq:NP_001031104.1RefSeq:NP_564316.1RefSeq:NP_849724.1RefSeq:NP_849725.2
RefSeq:NP_973934.1SMR:Q8GYB1STRING:3702.AT1G28960.1SUPFAM:SSF55811
TAIR:AT1G28960tair10-symbols:ATNUDT15tair10-symbols:ATNUDX15tair10-symbols:NUDX15
UniGene:At.16391UniProt:Q8GYB1
Coordinates (TAIR10) chr1:-:10110135..10111607
Molecular Weight (calculated) 32826.20 Da
IEP (calculated) 5.15
GRAVY (calculated) -0.44
Length 293 amino acids
Sequence (TAIR10)
(BLAST)
001: MFLLYRRLPS FARTTTTTLL CKSMEPAITA TSSSSFGGGS SRLAALAQQL RQYKPPPSSS FDDSEEMQTD QETAGKVVSQ VGFQESIAPL SKDPDRFKPK
101: RAAVLICLFE GDDGDLRVIL TKRSSKLSTH SGEVSLPGGK AEEDDKDDGM TATREAEEEI GLDPSLVDVV TSLEPFLSKH LLRVIPVIGI LRDKNKFNPI
201: PNPGEVEAVF DAPLEMFLKD ENRRSEEREW MGEKYLIHYF DYRTGDKDYM IWGLTAGILI RAASVTYERP PAFIEQCPKF KYPKMVEKHT CMP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)