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AT4G32480.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF506)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF506) ; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF506, plant (InterPro:IPR006502); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF506) (TAIR:AT2G20670.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IVXVeggNOG:ENOG410YC9TEMBL:AL034567EMBL:AL161581
EMBL:AY052287EMBL:AY061919EMBL:CP002687EnsemblPlants:AT4G32480
EnsemblPlants:AT4G32480.1entrez:829383GeneID:829383Gramene:AT4G32480.1
hmmpanther:PTHR31579hmmpanther:PTHR31579:SF11HOGENOM:HOG000238268InterPro:IPR006502
KEGG:ath:AT4G32480OMA:GNHSPEDPANTHER:PTHR31579Pfam:PF04720
PhylomeDB:Q9SUU4PIR:T05358Proteomes:UP000006548RefSeq:NP_194974.1
STRING:3702.AT4G32480.1TAIR:AT4G32480TIGRfam:TIGR01615TIGRFAMs:TIGR01615
UniGene:At.2514UniProt:Q9SUU4
Coordinates (TAIR10) chr4:+:15676488..15677776
Molecular Weight (calculated) 32595.10 Da
IEP (calculated) 7.66
GRAVY (calculated) -0.50
Length 287 amino acids
Sequence (TAIR10)
(BLAST)
001: MDRQSSDDIM KFLDGMASSD DVLFGFLDEG NHSPEDYNFA AGDESEVDND TTDCNSEENR KFWQEHEQLL QATLYRTSSI ETKIRQATKE ALKVVRSKGL
101: VCVCRRPVTD GCRSCLRGEV SSLLREAGYD CVISKSKWRS SHEIPAGEHE YLEVVDKSVS KKGEIRVVIE LCFRAEFEMA RGSEEYKRLI GMLPEVYVGK
201: TERLKSLIKI LCTAAKKCMK DKKMHMGPWR KHKYMQAKWF GTCERKSVSP VSETEENMFP VAKQRVSMLN YGLFGAGIGR PTVVAVV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)