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AT4G28040.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.981
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : nodulin MtN21 /EamA-like transporter family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
nodulin MtN21 /EamA-like transporter family protein; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 /EamA-like transporter family protein (TAIR:AT4G30420.1); Has 2230 Blast hits to 2223 proteins in 427 species: Archae - 12; Bacteria - 797; Metazoa - 2; Fungi - 0; Plants - 1207; Viruses - 0; Other Eukaryotes - 212 (source: NCBI BLink).
Protein Annotations
BioGrid:14206eggNOG:ENOG410JT3NeggNOG:ENOG411087WEMBL:AF370525
EMBL:AK317378EMBL:AL035524EMBL:AL161572EMBL:AY081516
EMBL:CP002687EnsemblPlants:AT4G28040EnsemblPlants:AT4G28040.1EnsemblPlants:AT4G28040.2
EnsemblPlants:AT4G28040.3EnsemblPlants:AT4G28040.4EnsemblPlants:AT4G28040.5entrez:828919
GeneID:828919Genevisible:Q9SUD5GO:GO:0005886GO:GO:0006810
GO:GO:0016021GO:GO:0022857GO:GO:0055085Gramene:AT4G28040.1
Gramene:AT4G28040.2Gramene:AT4G28040.3Gramene:AT4G28040.4Gramene:AT4G28040.5
hmmpanther:PTHR31218hmmpanther:PTHR31218:SF60HOGENOM:HOG000237441InParanoid:Q9SUD5
IntAct:Q9SUD5InterPro:IPR000620InterPro:IPR030184KEGG:ath:AT4G28040
OMA:SSMACAMPANTHER:PTHR31218PaxDb:Q9SUD5Pfam:PF00892
Pfam:Q9SUD5PhylomeDB:Q9SUD5PIR:T02905PRIDE:Q9SUD5
PRO:PR:Q9SUD5ProteinModelPortal:Q9SUD5Proteomes:UP000006548RefSeq:NP_001031735.1
RefSeq:NP_001031736.1RefSeq:NP_001119071.1RefSeq:NP_194533.1RefSeq:NP_974628.1
STRING:3702.AT4G28040.1SUPFAM:0043518TAIR:AT4G28040TMHMM:TMhelix
UniGene:At.48908UniGene:At.71113UniProt:Q9SUD5
Coordinates (TAIR10) chr4:+:13940881..13942201
Molecular Weight (calculated) 39349.70 Da
IEP (calculated) 8.31
GRAVY (calculated) 0.69
Length 359 amino acids
Sequence (TAIR10)
(BLAST)
001: MEISKYKAVL ALVMLQFTSA GVALFTKAAF MEGLNPTVFV VYRQAIATLF ICPISFISAW RKENKPSLGV RGFWWVALTA VIGVTVNQNA YFKGIDLSSS
101: SMACAMTNLI PAVTFIISII VGFESIKRRS MKSVAKVIGT GVCVGGAMAM TFLRGPKLLN ALLNQDNTAW LLGCFFLLIS TFAWSLWLIL QVPIASHCPD
201: HLYTSACTCF IATIASFLVA LALGNTHLPP WKLDSFLKLS CCIYSGFQLA ISFFLQAWIV SQKGPVFSAL FNPLSAVIVT FFGALYLKEQ TYLGSLLGAL
301: AIILGLYIVL WGKSEDYQEE STDLKLENEH NTSSQSDIVS IMIGDKAFRS SELLEPLLM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)