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AT4G37220.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.718
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Cold acclimation protein WCOR413 family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Cold acclimation protein WCOR413 family; CONTAINS InterPro DOMAIN/s: Cold acclimation WCOR413 (InterPro:IPR008892); BEST Arabidopsis thaliana protein match is: cold-regulated 413-plasma membrane 2 (TAIR:AT3G50830.1); Has 160 Blast hits to 157 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 160; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:15157eggNOG:ENOG410JWVDeggNOG:ENOG41104JTEMBL:AK117399
EMBL:AL161591EMBL:BT005584EMBL:CP002687EMBL:Z99707
EnsemblPlants:AT4G37220EnsemblPlants:AT4G37220.1entrez:829876GeneID:829876
Genevisible:O23164GO:GO:0005886GO:GO:0009744GO:GO:0009749
GO:GO:0009750GO:GO:0016021Gramene:AT4G37220.1hmmpanther:PTHR33596
hmmpanther:PTHR33596:SF1HOGENOM:HOG000239742InParanoid:O23164InterPro:IPR008892
KEGG:ath:AT4G37220OMA:YLFHEHIPaxDb:O23164Pfam:O23164
Pfam:PF05562PhylomeDB:O23164PIR:G85439PRIDE:O23164
PRO:PR:O23164ProteinModelPortal:O23164Proteomes:UP000006548RefSeq:NP_195439.1
STRING:3702.AT4G37220.1TAIR:AT4G37220TMHMM:TMhelixUniGene:At.31263
UniProt:O23164
Coordinates (TAIR10) chr4:+:17515106..17515969
Molecular Weight (calculated) 22633.20 Da
IEP (calculated) 8.70
GRAVY (calculated) 0.80
Length 202 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRGEFLAMK TEENAANLIN SDMNEFVAAA KKLVKDVGML GGVGFGTSVL QWAASIFAIY LLILDRTNWK TKMLTTLLVP YIFFTLPSVI FQFFSGDFGK
101: WIALIAIIVR LFFPKEFPEW LEIPVALILI VVVSPSLIAW TLRESWVGAV ICLVIACYLF HEHIKASGGF KNSFTQKNGI SNTIGIVALL VYPVWTIFFH
201: IF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)