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AT5G19340.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05980.1); Has 1000 Blast hits to 906 proteins in 61 species: Archae - 0; Bacteria - 4; Metazoa - 62; Fungi - 36; Plants - 128; Viruses - 4; Other Eukaryotes - 766 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JCSHeggNOG:ENOG41113TEEMBL:AK229305EMBL:BT011221
EMBL:BT012144EMBL:CP002688EnsemblPlants:AT5G19340EnsemblPlants:AT5G19340.1
entrez:832054GeneID:832054Gramene:AT5G19340.1hmmpanther:PTHR31722
hmmpanther:PTHR31722:SF2HOGENOM:HOG000143352KEGG:ath:AT5G19340OMA:NMITADE
PhylomeDB:Q6NM33Proteomes:UP000006548RefSeq:NP_197435.2TAIR:AT5G19340
UniGene:At.43486UniProt:Q6NM33
Coordinates (TAIR10) chr5:-:6515371..6516162
Molecular Weight (calculated) 29356.40 Da
IEP (calculated) 8.87
GRAVY (calculated) -0.84
Length 263 amino acids
Sequence (TAIR10)
(BLAST)
001: MVSAETATMA EAEPSTTGPR ISFSADLSSS DSDGDFICIN PVMNLIVGRE EKDKSSVKAG DFEFLSENAT MLSADELFSE GKLLPFWQVK HSEKLKNVTL
101: KPKVEVQQEE EDHKVVNEEG FVHNKEQENN NNNNNNNNNR GSWFLDDDPS PRPPKCTVLW KELLRLKKQR TTTTTTASTR VSSLSPSSSS SSTSSSSSSI
201: GDAVKKEERE KEGKRGKKGL ERTRSVTMRI RPMIHVPVCT PSKSSSRLPP LFPLRLQKNR VER
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)