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AT5G48180.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31186290 (2019): cytosol None
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28611809 (2017): cytosol
  • PMID:27122571 (2016): mitochondrion
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : nitrile specifier protein 5
Curator
Summary (TAIR10)
Encodes a nitrile-specifier protein NSP5. NSP5 is one out of five (At3g16400/NSP1, At2g33070/NSP2, At3g16390/NSP3, At3g16410/NSP4 and At5g48180/NSP5) A. thaliana epithiospecifier protein (ESP) homologues that promote simple nitrile, but not epithionitrile or thiocyanate formation.
Computational
Description (TAIR10)
nitrile specifier protein 5 (NSP5); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: glucosinolate catabolic process, nitrile biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT3G07720.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:20118DNASU:834871eggNOG:ENOG410Y5WMeggNOG:KOG0379
EMBL:AB023039EMBL:AY059952EMBL:AY081619EMBL:AY085861
EMBL:CP002688EnsemblPlants:AT5G48180EnsemblPlants:AT5G48180.1entrez:834871
Gene3D:2.120.10.80GeneID:834871Genevisible:Q93XW5GO:GO:0005829
GO:GO:0019762GO:GO:0080028Gramene:AT5G48180.1gramene_pathway:1.1.1.-
gramene_pathway:2.7.7.-gramene_pathway:PWY-5267gramene_pathway:PWYQT-4476hmmpanther:PTHR23244
hmmpanther:PTHR23244:SF276HOGENOM:HOG000217506InParanoid:Q93XW5InterPro:IPR006652
InterPro:IPR015915iPTMnet:Q93XW5KEGG:ath:AT5G48180OMA:NTLHAYD
PaxDb:Q93XW5Pfam:PF01344Pfam:Q93XW5PhylomeDB:Q93XW5
PRIDE:Q93XW5PRO:PR:Q93XW5ProteinModelPortal:Q93XW5Proteomes:UP000006548
RefSeq:NP_568692.1SMR:Q93XW5STRING:3702.AT5G48180.1SUPFAM:0052715
SwissPalm:Q93XW5TAIR:AT5G48180tair10-symbols:NSP5UniGene:At.24869
UniGene:At.68591UniGene:At.71782UniProt:Q93XW5
Coordinates (TAIR10) chr5:-:19541283..19542358
Molecular Weight (calculated) 35855.20 Da
IEP (calculated) 4.84
GRAVY (calculated) -0.32
Length 326 amino acids
Sequence (TAIR10)
(BLAST)
001: MCPVENKWLK VGQKGAGPGA RSSHAMTVVG NKVYCFGGEL KPTIHIDNDL YVFDLETQEW SIAPATGEAP FPCFGVSMVT IGSTIYVYGG RDDKRRYNGL
101: HSYDTETNEW KLLAPVEEGL PGRSYHSMAG DDRKVYVFGG VTAKGRVNTL HAYDVVDQKW VEYPAAGEAC KGRGAPGLVV VEGRIWVLFG FDGNELGDIH
201: CFDLASEQWK AVETTGDVPA ARSVFPAVSY GKYIVIYGGE EEPHELMHMG AGKMSGEVYQ LDTETLVWER IVCGNEEEKP SQRGWCAFTK AVKDGEEGLL
301: VHGGNSPTNE RLDDLVFWGF SHLNVN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)