AT4G14030.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:cytosol 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : selenium-binding protein 1 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
selenium-binding protein 1 (SBP1); FUNCTIONS IN: selenium binding; INVOLVED IN: response to cadmium ion, response to hydrogen peroxide, cellular response to selenium ion, sulfate assimilation; LOCATED IN: cellular_component unknown; EXPRESSED IN: guard cell, cultured cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Cytochrome cd1-nitrite reductase-like, C-terminal haem d1 (InterPro:IPR011048), Selenium-binding protein (InterPro:IPR008826); BEST Arabidopsis thaliana protein match is: selenium-binding protein 2 (TAIR:AT4G14040.1); Has 911 Blast hits to 901 proteins in 208 species: Archae - 39; Bacteria - 196; Metazoa - 215; Fungi - 0; Plants - 80; Viruses - 0; Other Eukaryotes - 381 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr4:-:8098121..8100165 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 54060.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 5.41 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.27 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 490 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MATETEVVAP VTVSNGGSKG CCKYGGPGYA TPLAAMSGPS EKLIYVTAVY TGTGIDKPDY LATVDVDPSS PSYSSVIHRL PMPFVGDELH HSGWNSCSSC 101: HGDASVDRRY LVLPSLISGR IYAIDTKENP RAPSLYKYVD PKEIADKTGL AFPHTAHCLA TGEILVSCLG DEEGNAKGNG FLLLDSDFNI KNRWEKPGHS 201: PLYGYDFWYQ PRHKTMISTS WGAPKAFSKG FNLQHVADGL YGSHLHVYSW PGGEIKQLID LGPTGLLPLE IRFLHDPSKD TGFVGSALSS NMIRFFKNSD 301: ETWSHEVVIS VKPLKVENWI LPEMPGLITD FLISLDDRFI YFVNWLHGDI RQYNIEDPKN PVLTGQIWVG GLLQKGSPVK AVGEDGNTFQ FEVPQIKGKS 401: LRGGPQMIQL SLDGKRLYAT NSLFSAWDRQ FYPEIMEKGS HIIQIDVDTE KGGLTINPDF FVDFGDEPDG PSLAHEMRYP GGDCTSDIWI |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)