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AT4G14030.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): cytosol None
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25641898 (2015): plasma membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22215637 (2012): plasma membrane
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : selenium-binding protein 1
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
selenium-binding protein 1 (SBP1); FUNCTIONS IN: selenium binding; INVOLVED IN: response to cadmium ion, response to hydrogen peroxide, cellular response to selenium ion, sulfate assimilation; LOCATED IN: cellular_component unknown; EXPRESSED IN: guard cell, cultured cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Cytochrome cd1-nitrite reductase-like, C-terminal haem d1 (InterPro:IPR011048), Selenium-binding protein (InterPro:IPR008826); BEST Arabidopsis thaliana protein match is: selenium-binding protein 2 (TAIR:AT4G14040.1); Has 911 Blast hits to 901 proteins in 208 species: Archae - 39; Bacteria - 196; Metazoa - 215; Fungi - 0; Plants - 80; Viruses - 0; Other Eukaryotes - 381 (source: NCBI BLink).
Protein Annotations
BioGrid:12336eggNOG:ENOG410XP4FeggNOG:KOG0918EMBL:AJ401229
EMBL:AL161537EMBL:AY062634EMBL:AY128727EMBL:CP002687
EMBL:Z27257EMBL:Z97335EnsemblPlants:AT4G14030EnsemblPlants:AT4G14030.1
EnsemblPlants:AT4G14030.2entrez:827039Gene3D:2.130.10.10GeneID:827039
Genevisible:O23264GO:GO:0000103GO:GO:0005829GO:GO:0008430
GO:GO:0009506GO:GO:0042542GO:GO:0046686GO:GO:0071291
Gramene:AT4G14030.1Gramene:AT4G14030.2hmmpanther:PTHR23300HOGENOM:HOG000263885
InParanoid:O23264InterPro:IPR008826InterPro:IPR015943iPTMnet:O23264
KEGG:ath:AT4G14030KO:K17285OMA:IDIPGKLPANTHER:PTHR23300
PaxDb:O23264Pfam:O23264Pfam:PF05694PhylomeDB:O23264
PIR:D71401PRIDE:O23264PRO:PR:O23264ProteinModelPortal:O23264
Proteomes:UP000006548RefSeq:NP_001190723.1RefSeq:NP_193139.1SMR:O23264
STRING:3702.AT4G14030.1SUPFAM:0047643TAIR:AT4G14030tair10-symbols:SBP1
UniGene:At.4249UniProt:O23264
Coordinates (TAIR10) chr4:-:8098121..8100165
Molecular Weight (calculated) 54060.00 Da
IEP (calculated) 5.41
GRAVY (calculated) -0.27
Length 490 amino acids
Sequence (TAIR10)
(BLAST)
001: MATETEVVAP VTVSNGGSKG CCKYGGPGYA TPLAAMSGPS EKLIYVTAVY TGTGIDKPDY LATVDVDPSS PSYSSVIHRL PMPFVGDELH HSGWNSCSSC
101: HGDASVDRRY LVLPSLISGR IYAIDTKENP RAPSLYKYVD PKEIADKTGL AFPHTAHCLA TGEILVSCLG DEEGNAKGNG FLLLDSDFNI KNRWEKPGHS
201: PLYGYDFWYQ PRHKTMISTS WGAPKAFSKG FNLQHVADGL YGSHLHVYSW PGGEIKQLID LGPTGLLPLE IRFLHDPSKD TGFVGSALSS NMIRFFKNSD
301: ETWSHEVVIS VKPLKVENWI LPEMPGLITD FLISLDDRFI YFVNWLHGDI RQYNIEDPKN PVLTGQIWVG GLLQKGSPVK AVGEDGNTFQ FEVPQIKGKS
401: LRGGPQMIQL SLDGKRLYAT NSLFSAWDRQ FYPEIMEKGS HIIQIDVDTE KGGLTINPDF FVDFGDEPDG PSLAHEMRYP GGDCTSDIWI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)