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AT1G28520.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.996
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : vascular plant one zinc finger protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
vascular plant one zinc finger protein (VOZ1); BEST Arabidopsis thaliana protein match is: vascular plant one zinc finger protein 2 (TAIR:AT2G42400.1); Has 77 Blast hits to 70 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:24987eggNOG:ENOG410IKDPeggNOG:ENOG410YAZSEMBL:AB125256
EMBL:AC007508EMBL:AC010155EMBL:AK227014EMBL:AK317006
EMBL:BT020261EMBL:CP002684EnsemblPlants:AT1G28520EnsemblPlants:AT1G28520.1
EnsemblPlants:AT1G28520.2entrez:839752GeneID:839752Genevisible:Q9SGQ0
GO:GO:0005634GO:GO:0005737GO:GO:0006351GO:GO:0009408
GO:GO:0009414GO:GO:0009585GO:GO:0009631GO:GO:0009816
GO:GO:0043565GO:GO:0045893GO:GO:0046872GO:GO:0048574
GO:GO:0048578Gramene:AT1G28520.1Gramene:AT1G28520.2hmmpanther:PTHR33873
hmmpanther:PTHR33873:SF1HOGENOM:HOG000030392InParanoid:Q9SGQ0IntAct:Q9SGQ0
KEGG:ath:AT1G28520OMA:NCRSASHPaxDb:Q9SGQ0Pfam:Q9SGQ0
PhylomeDB:Q9SGQ0PIR:B86411PRIDE:Q9SGQ0PRO:PR:Q9SGQ0
Proteomes:UP000006548RefSeq:NP_001077618.1RefSeq:NP_174174.1STRING:3702.AT1G28520.1
TAIR:AT1G28520tair10-symbols:ATVOZ1tair10-symbols:VOZ1UniGene:At.40873
UniProt:Q9SGQ0
Coordinates (TAIR10) chr1:+:10029713..10031479
Molecular Weight (calculated) 54082.50 Da
IEP (calculated) 5.90
GRAVY (calculated) -0.64
Length 486 amino acids
Sequence (TAIR10)
(BLAST)
001: MTGKRSKTNC RSASHKLFKD KAKNRVDDLQ GMLLDLQFAR KESRPTDVTL LEEQVNQMLR EWKSELNEPS PASSLQQGGT LGSFSSDICR LLQLCDEEDD
101: ATSKLAAPKP EPADQNLEAG KAAVFQRGYN LVQGKSEHGL PLVDNCKDLS LAAGNNFDGT APLEYHQQYD LQQEFEPNFN GGFNNCPSYG VVEGPIHISN
201: FIPTICPPPS AFLGPKCALW DCPRPAQGFD WFQDYCSSFH AALAFNEGPP GMNPVVRPGG IGLKDGLLFA ALSAKAGGKD VGIPECEGAA TAKSPWNAPE
301: LFDLTVLESE TLREWLFFDK PRRAFESGNR KQRSLPDYNG RGWHESRKQI MVEFGGLKRS YYMDPQPLHH FEWHLYEYEI NKCDACALYR LELKLVDGKK
401: TSKGKVSNDS VADLQKQMGR LTAEFPPENN TTNTTNNNKR CIKGRPKVST KVATGNVQNT VEQANDYGVG EEFNYLVGNL SDYYIP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)