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AT2G45290.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Transketolase
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transketolase; FUNCTIONS IN: catalytic activity, transketolase activity; INVOLVED IN: response to cadmium ion; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Transketolase, bacterial-like (InterPro:IPR005478), Transketolase, N-terminal (InterPro:IPR005474), Transketolase, C-terminal (InterPro:IPR005476), Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II (InterPro:IPR009014), Transketolase-like, C-terminal (InterPro:IPR015941), Transketolase-like, pyrimidine-binding domain (InterPro:IPR005475), Transketolase binding site (InterPro:IPR020826); BEST Arabidopsis thaliana protein match is: Transketolase (TAIR:AT3G60750.1); Has 19460 Blast hits to 19400 proteins in 2776 species: Archae - 200; Bacteria - 11520; Metazoa - 310; Fungi - 312; Plants - 211; Viruses - 0; Other Eukaryotes - 6907 (source: NCBI BLink).
Protein Annotations
BioGrid:4473EC:2.2.1.1eggNOG:COG0021eggNOG:KOG0523
EMBL:AC002387EMBL:AY057528EMBL:CP002685EnsemblPlants:AT2G45290
EnsemblPlants:AT2G45290.1entrez:819137Gene3D:3.40.50.920Gene3D:3.40.50.970
GeneID:819137Genevisible:F4IW47GO:GO:0004802GO:GO:0009507
GO:GO:0009535GO:GO:0009536GO:GO:0009570GO:GO:0019253
GO:GO:0046686GO:GO:0046872Gramene:AT2G45290.1gramene_pathway:2.2.1.1
gramene_pathway:CALVIN-PWYgramene_pathway:NONOXIPENT-PWYgramene_pathway:PWY-5723gramene_pathway:RIBOKIN2-PWY
gramene_plant_reactome:1119519gramene_plant_reactome:6877178gramene_plant_reactome:6877216hmmpanther:PTHR11624
hmmpanther:PTHR11624:SF81HOGENOM:HOG000225954InParanoid:F4IW47InterPro:IPR005474
InterPro:IPR005475InterPro:IPR005478InterPro:IPR009014InterPro:IPR020826
InterPro:IPR029061InterPro:IPR033247InterPro:IPR033248iPTMnet:F4IW47
KEGG:00030+2.2.1.1KEGG:00710+2.2.1.1KEGG:00730+2.2.1.7KEGG:00900+2.2.1.7
KEGG:ath:AT2G45290KO:K00615ncoils:CoilOMA:LNWNHGP
PANTHER:PTHR11624PaxDb:F4IW47Pfam:F4IW47Pfam:PF00456
Pfam:PF02779Pfam:PF02780PIR:G84888PRIDE:F4IW47
PRO:PR:F4IW47PROSITE:PS00801PROSITE:PS00802ProteinModelPortal:F4IW47
Proteomes:UP000006548Reactome:R-ATH-163754Reactome:R-ATH-71336RefSeq:NP_566041.2
scanprosite:PS00801scanprosite:PS00802SMART:SM00861SMR:F4IW47
STRING:3702.AT2G45290.1SUPFAM:SSF52518SUPFAM:SSF52922TAIR:AT2G45290
TIGRfam:TIGR00232TIGRFAMs:TIGR00232UniGene:At.12300UniGene:At.67348
unipathway:UPA00064UniPathway:UPA00116UniProt:F4IW47
Coordinates (TAIR10) chr2:+:18672737..18675589
Molecular Weight (calculated) 79926.60 Da
IEP (calculated) 6.55
GRAVY (calculated) -0.23
Length 741 amino acids
Sequence (TAIR10)
(BLAST)
001: MASTSSLALS QALLTRAISH NGSENCVSIP AFSALKSTSP RTSGTISSRR RNASTISHSL RPLVRAAAVE AIVTSSDSSL VDKSVNTIRF LAIDAVEKAK
101: SGHPGLPMGC APMSHILYDE VMKYNPKNPY WFNRDRFVLS AGHGCMLQYA LLHLAGYDSV REEDLKSFRQ WGSKTPGHPE NFETPGVEAT TGPLGQGIAN
201: AVGLALAEKH LAARFNKPDN EIVDHYTYSI LGDGCQMEGI SNEVCSLAGH WGLGKLIAFY DDNHISIDGD TDIAFTESVD KRFEALGWHV IWVKNGNNGY
301: DEIRAAIREA KAVTDKPTLI KVTTTIGYGS PNKANSYSVH GAALGEKEVE ATRNNLGWPY EPFHVPEDVK SHWSRHTPEG AALEADWNAK FAAYEKKYPE
401: EAAELKSIIS GELPVGWEKA LPTYTPDSPG DATRNLSQQC LNALAKAVPG FLGGSADLAS SNMTMLKAFG NFQKATPEER NLRFGVREHG MGAICNGIAL
501: HSPGFIPYCA TFFVFTDYMR AAMRISALSE AGVIYVMTHD SIGLGEDGPT HQPIEHLSSF RAMPNIMMFR PADGNETAGA YKIAVTKRKT PSVLALSRQK
601: LPQLPGTSIE SVEKGGYTIS DNSTGNKPDV ILIGTGSELE IAAQAAEKLR EQGKSVRVVS FVCWELFDEQ SDAYKESVLP SDVSARVSIE AGSTFGWGKI
701: VGGKGKSIGI DTFGASAPAG KLYKEFGITI EAMVEAAKSL I
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)