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AT2G44410.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G58030.4); Has 1419 Blast hits to 1419 proteins in 219 species: Archae - 0; Bacteria - 0; Metazoa - 641; Fungi - 147; Plants - 430; Viruses - 10; Other Eukaryotes - 191 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111IHVeggNOG:KOG0823EMBL:BT011628EMBL:BT012267
EMBL:CP002685EnsemblPlants:AT2G44410EnsemblPlants:AT2G44410.1entrez:819048
Gene3D:3.30.40.10GeneID:819048GO:GO:0008270Gramene:AT2G44410.1
hmmpanther:PTHR12313hmmpanther:PTHR12313:SF14HOGENOM:HOG000143348InterPro:IPR001841
InterPro:IPR013083KEGG:ath:AT2G44410ncoils:CoilOMA:IEHIRRT
Pfam:PF13920Pfscan:PS50089PhylomeDB:Q6NLR3PROSITE:PS50089
Proteomes:UP000006548RefSeq:NP_181969.2SMART:SM00184SMR:Q6NLR3
STRING:3702.AT2G44410.1SUPFAM:SSF57850TAIR:AT2G44410UniGene:At.21385
UniProt:Q6NLR3
Coordinates (TAIR10) chr2:+:18328873..18330114
Molecular Weight (calculated) 45838.60 Da
IEP (calculated) 5.98
GRAVY (calculated) -0.63
Length 413 amino acids
Sequence (TAIR10)
(BLAST)
001: MSTSVQGETM DLDLNQEPSS DSESPGGLMT ALSPMLEELE SAQERIQERI RQLEVIVSRI REREITTTTT PALVSPNEHR DSTAGVIHER SRERLVENGE
101: NKTYLIAKAL NMEKTSSVPG GFFDCNICLE KAEDPILTCC GHLFCWGCFY QLPLIYLNIK ECPVCDGEVT DAEVIPIYGN GDDCDGTKPK LEDCGISLPP
201: RPNAKRVESV RQKIINRGNP FFPGHENEAI EHIRRTIDSI GLQALAQGDE FGLTNIINNG GDNGGQQQQQ QHHHHHHPPF GPLRLLPPYA TFPGLLVDTS
301: DIPAPFDDDA FDVDSFVDTT SLRRNRRRPS PAVRASYQRN RSNNASQTIS FRLGSSASSA PREFAVPSSS IMTRSQTVNP TEVVTSSTSA SSSRRRTEDV
401: NNGPRTRSRR RLR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)