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AT4G19640.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
endoplasmic reticulum 0.500
golgi 0.500
ASURE: endoplasmic reticulum,golgi
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23682115 (2013): Golgi trans-Golgi network
  • PMID:23532067 (2013): Golgi trans-Golgi network
  • PMID:18055610 (2007): Golgi trans-Golgi network
  • PMID:17259264 (2007): Golgi trans-Golgi network
  • PMID:16856980 (2006): endoplasmic reticulum
  • PMID:16723734 (2006): endoplasmic reticulum
  • PMID:16461582 (2006): Golgi trans-Golgi network
  • PMID:16399085 (2006): endoplasmic reticulum
  • PMID:16103374 (2005): endoplasmic reticulum
  • PMID:15743878 (2005): endoplasmic reticulum
  • PMID:15659621 (2005): endoplasmic reticulum
  • PMID:15561767 (2004): Golgi
  • PMID:15546360 (2004): endoplasmic reticulum
  • PMID:15509844 (2004): plant-type vacuole
  • PMID:12553910 (2003): Golgi trans-Golgi network
  • PMID:11532937 (2001): Golgi trans-Golgi network
  • PMID:11532937 (2001): plasma membrane
  • PMID:11532937 (2001): endoplasmic reticulum
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:22550958 (2012): plastid
  • PMID:17644812 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Ras-related small GTP-binding family protein
Curator
Summary (TAIR10)
Encodes Ara7.
Computational
Description (TAIR10)
ARA7; FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: endosome, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab5-related (InterPro:IPR015599); BEST Arabidopsis thaliana protein match is: RAB homolog 1 (TAIR:AT5G45130.1); Has 26416 Blast hits to 26384 proteins in 719 species: Archae - 27; Bacteria - 133; Metazoa - 13862; Fungi - 3690; Plants - 2969; Viruses - 20; Other Eukaryotes - 5715 (source: NCBI BLink).
Protein Annotations
BioGrid:12999eggNOG:ENOG410YCCPeggNOG:KOG0092EMBL:AB038491
EMBL:AF370309EMBL:AL021768EMBL:AL161551EMBL:AY052670
EMBL:AY063095EMBL:CP002687EnsemblPlants:AT4G19640EnsemblPlants:AT4G19640.1
entrez:827706EvolutionaryTrace:Q9SN68Gene3D:3.40.50.300GeneID:827706
Genevisible:Q9SN68GO:GO:0005525GO:GO:0005768GO:GO:0005769
GO:GO:0005774GO:GO:0005783GO:GO:0005886GO:GO:0006897
GO:GO:0007264GO:GO:0015031GO:GO:0030139GO:GO:0031901
Gramene:AT4G19640.1hmmpanther:PTHR24073hmmpanther:PTHR24073:SF570HOGENOM:HOG000233968
InParanoid:Q9SN68IntAct:Q9SN68InterPro:IPR001806InterPro:IPR005225
InterPro:IPR027417iPTMnet:Q9SN68KEGG:ath:AT4G19640OMA:WASPNIV
PaxDb:Q9SN68PDB:2EFCPDB:2EFDPDB:2EFE
PDB:2EFHPDB:4G01PDBsum:2EFCPDBsum:2EFD
PDBsum:2EFEPDBsum:2EFHPDBsum:4G01Pfam:PF00071
Pfam:Q9SN68Pfscan:PS51419PhylomeDB:Q9SN68PIR:T06157
PRIDE:Q9SN68PRO:PR:Q9SN68PROSITE:PS51419ProteinModelPortal:Q9SN68
Proteomes:UP000006548RefSeq:NP_193699.1SMR:Q9SN68STRING:3702.AT4G19640.1
SUPFAM:SSF52540TAIR:AT4G19640tair10-symbols:ARA-7tair10-symbols:ARA7
tair10-symbols:ATRAB-F2Btair10-symbols:ATRAB5Btair10-symbols:ATRABF2Btair10-symbols:RAB-F2B
tair10-symbols:RABF2BTIGRfam:TIGR00231TIGRFAMs:TIGR00231UniGene:At.2030
UniProt:Q9SN68
Coordinates (TAIR10) chr4:-:10687441..10689449
Molecular Weight (calculated) 21874.00 Da
IEP (calculated) 5.98
GRAVY (calculated) -0.13
Length 200 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAAGNKSIN AKLVLLGDVG AGKSSLVLRF VKDQFVEFQE STIGAAFFSQ TLAVNDATVK FEIWDTAGQE RYHSLAPMYY RGAAAAIIVF DVTNQASFER
101: AKKWVQELQA QGNPNMVMAL AGNKSDLLDA RKVTAEDAQT YAQENGLFFM ETSAKTATNV KEIFYEIARR LPRVQPTENP TGMVLPDRAM DRAVSSSCCA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)