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AT5G45130.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:15546360 (2004): endoplasmic reticulum
  • PMID:15509844 (2004): plant-type vacuole
  • PMID:31520498 (2020): mitochondrion
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:22923678 (2012): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RAB homolog 1
Curator
Summary (TAIR10)
small GTP binding protein
Computational
Description (TAIR10)
RAB homolog 1 (RHA1); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: endomembrane system; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab5-related (InterPro:IPR015599); BEST Arabidopsis thaliana protein match is: Ras-related small GTP-binding family protein (TAIR:AT4G19640.1); Has 26267 Blast hits to 26237 proteins in 716 species: Archae - 26; Bacteria - 136; Metazoa - 13722; Fungi - 3681; Plants - 2979; Viruses - 20; Other Eukaryotes - 5703 (source: NCBI BLink).
Protein Annotations
BioGrid:19798eggNOG:ENOG410YCCPeggNOG:KOG0092EMBL:AB019224
EMBL:AF389298EMBL:AY097362EMBL:CP002688EMBL:X59152
EMBL:Z22958EnsemblPlants:AT5G45130EnsemblPlants:AT5G45130.1entrez:834549
Gene3D:3.40.50.300GeneID:834549Genevisible:P31582GO:GO:0005525
GO:GO:0005768GO:GO:0005774GO:GO:0005783GO:GO:0007034
GO:GO:0007264GO:GO:0015031GO:GO:0030139Gramene:AT5G45130.1
hmmpanther:PTHR24073hmmpanther:PTHR24073:SF570HOGENOM:HOG000233968InParanoid:P31582
IntAct:P31582InterPro:IPR001806InterPro:IPR005225InterPro:IPR027417
KEGG:ath:AT5G45130OMA:TNSDTFAPaxDb:P31582Pfam:P31582
Pfam:PF00071Pfscan:PS51419PhylomeDB:P31582PIR:S23727
PRIDE:P31582PRO:PR:P31582PROSITE:PS51419ProteinModelPortal:P31582
Proteomes:UP000006548RefSeq:NP_199326.1SMR:P31582STRING:3702.AT5G45130.1
SUPFAM:SSF52540TAIR:AT5G45130tair10-symbols:ATRAB-F2Atair10-symbols:ATRAB5A
tair10-symbols:ATRABF2Atair10-symbols:RAB-F2Atair10-symbols:RAB5Atair10-symbols:RABF2A
tair10-symbols:RHA1TIGRfam:TIGR00231TIGRFAMs:TIGR00231UniGene:At.23631
UniProt:P31582
Coordinates (TAIR10) chr5:+:18244495..18246060
Molecular Weight (calculated) 21654.80 Da
IEP (calculated) 5.31
GRAVY (calculated) -0.08
Length 200 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSGNKNIN AKLVLLGDVG AGKSSLVLRF VKDQFVEFQE STIGAAFFSQ TLAVNDATVK FEIWDTAGQE RYHSLAPMYY RGAAAAIIVF DITNQASFER
101: AKKWVQELQA QGNPNMVMAL AGNKADLLDA RKVSAEEAEI YAQENSLFFM ETSAKTATNV KDIFYEIAKR LPRVQPAENP TGMVLPNGPG ATAVSSSCCA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)