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AT1G53400.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24030099 (2013): plasma membrane
  • PMID:22215637 (2012): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ubiquitin domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ubiquitin domain-containing protein; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: Ubiquitin domain-containing protein (TAIR:AT5G45740.1); Has 319 Blast hits to 318 proteins in 112 species: Archae - 0; Bacteria - 0; Metazoa - 144; Fungi - 63; Plants - 89; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IN8QeggNOG:ENOG410XY5YEMBL:AC008007EMBL:AF370164
EMBL:AY059126EMBL:CP002684EnsemblPlants:AT1G53400EnsemblPlants:AT1G53400.1
entrez:841776GeneID:841776Gramene:AT1G53400.1hmmpanther:PTHR13609
HOGENOM:HOG000241550IntAct:Q9MAG2InterPro:IPR032752KEGG:ath:AT1G53400
OMA:GCFDELGPfam:PF16455PhylomeDB:Q9MAG2PIR:H96573
Proteomes:UP000006548RefSeq:NP_564630.1SMR:Q9MAG2STRING:3702.AT1G53400.1
TAIR:AT1G53400UniGene:At.25284UniProt:Q9MAG2
Coordinates (TAIR10) chr1:+:19925009..19926400
Molecular Weight (calculated) 12707.00 Da
IEP (calculated) 5.23
GRAVY (calculated) -0.63
Length 114 amino acids
Sequence (TAIR10)
(BLAST)
001: MGCAGSTQSQ ADGSVKKIRK PKPWKHTQPI TKAELMKLRE EFWDTAPHYG GRKEIWDALR AAAEADISLA QAIVDSAGVI VQNTDLTVCY DERGAKYELP
101: KYVLSEPTNL EEEN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)