AT2G42780.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: integral to membrane, nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II transcription factor SIII, subunit A (InterPro:IPR010684); Has 187 Blast hits to 186 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 29; Plants - 38; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:17801037..17802646 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 33081.70 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.56 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.82 | ||||||||||||||||||||||||||||||||||||
| Length | 293 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLFERLTKKP PSLVDLCVRK AIDNVKYIGY VGGVDFQLLE QILQHCTLEQ LKHIEDATDD TDLSPITDKF WKGFYKKHYG EEDMKDLIED LEWNKVNDFK 101: WRNLYELKVI AVQQKEKELG GRLKERYKDE NERKQSRQTK VCSKAPPSKR PFWGNSASGY NLGHVKSNIM KKAKIDLLKS QEVKNLTAIK RNTIQKSFSI 201: STPKKTGLSA NSPSTSRSIP YGGRNLTETK KNTIQKSFSI SAPKRTGLSA NAPSTSRSVP SGGQKLPPRR INGLPGTAPS TSKNAATRQK HVM |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)