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AT3G22290.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:22923678 (2012): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Endoplasmic reticulum vesicle transporter protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Endoplasmic reticulum vesicle transporter protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1692 (InterPro:IPR012936); BEST Arabidopsis thaliana protein match is: Endoplasmic reticulum vesicle transporter protein (TAIR:AT1G22200.1); Has 1158 Blast hits to 1071 proteins in 203 species: Archae - 0; Bacteria - 0; Metazoa - 384; Fungi - 263; Plants - 270; Viruses - 0; Other Eukaryotes - 241 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XP7XeggNOG:KOG2667EMBL:AF370173EMBL:AK175429
EMBL:AK175983EMBL:AK176207EMBL:AK176296EMBL:AK221309
EMBL:CP002686EnsemblPlants:AT3G22290EnsemblPlants:AT3G22290.1entrez:821798
GeneID:821798GO:GO:0005783GO:GO:0016021Gramene:AT3G22290.1
hmmpanther:PTHR10984hmmpanther:PTHR10984:SF32HOGENOM:HOG000210954InterPro:IPR012936
KEGG:ath:AT3G22290OMA:RWMFRLIPfam:PF07970Pfam:PF13850
PhylomeDB:Q94K91Proteomes:UP000006548RefSeq:NP_188868.2SMR:Q94K91
STRING:3702.AT3G22290.1TAIR:AT3G22290TMHMM:TMhelixUniGene:At.6259
UniGene:At.73136UniProt:Q94K91
Coordinates (TAIR10) chr3:+:7882082..7885260
Molecular Weight (calculated) 40095.20 Da
IEP (calculated) 6.86
GRAVY (calculated) -0.19
Length 354 amino acids
Sequence (TAIR10)
(BLAST)
001: MGVKQALRSI DAFPRAEDHL LQKTQSGAVV SIVGLLIMAT LFLHELSYYL NTLTVHQMSV DLKRGETLPI HVNMTFPSLP CDVLSVDAID MSGKHEVDLD
101: TNIWKLRLNS HGHIIGTEYI SDLVEKGHEH GHSPHKHDGK EEHKNETETE ALNILGFDQA AETMIKKVKQ ALADGEGCRV YGVLDVQRVA GNFHISVHGL
201: NIYVAQMIFG GSKNVNVSHM IHDLSFGPKY PGIHNPLDDT NRILHDTSGT FKYYIKIVPT EYRYLSKDVL STNQYSVTEY FTPMTEFDRT WPAVYFLYDL
301: SPITVTIKEE RRSFLHLITR LCAVLGGTFA LTGMLDRWMF RFIESFNKKP STRA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)