AT1G36050.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.996 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Endoplasmic reticulum vesicle transporter protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Endoplasmic reticulum vesicle transporter protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: fatty acid biosynthetic process; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1692 (InterPro:IPR012936); BEST Arabidopsis thaliana protein match is: Endoplasmic reticulum vesicle transporter protein (TAIR:AT1G22200.1); Has 1210 Blast hits to 1080 proteins in 199 species: Archae - 0; Bacteria - 0; Metazoa - 398; Fungi - 262; Plants - 277; Viruses - 0; Other Eukaryotes - 273 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:13450467..13453683 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 55484.60 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.60 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.16 | ||||||||||||||||||||||||||||||||||||
| Length | 489 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAGILNKLRN LDAYPKINED FYSRTLSGGV ITLLSSVVMF LLFFSELRLY LHTVTETKLI VDTSRGETLR INFDITFPAL ACSILSVDAM DISGELHLDV 101: KHDIIKRRLD SNGNTIEARQ DGIGATKIEN PLQKHGGRLG HNETYCGSCY GAEAEEHDCC NSCEDVREAY RKKGWGVTNP DLIDQCKREG FLQRVKDEEG 201: EGCNIYGFLE VNKVAGNFHF APGKSFHQSG VHVHDLLAFQ KDSFNISHKI NRLTYGDYFP GVVNPLDKVE WSQDTPNAMY QYFIKVVPTV YTDIRGHTIQ 301: SNQFSVTEHV KSSEAGQLQS LPGVFFFYDL SPIKVTFTEE HISFLHFLTN VCAIVGGVFT VSGIIDAFIY HGQKAIKKKM EIVYGFNEWK KKKQNSLHNK 401: RLEYRESLLV LTRKLLLVNI LIPIAIYVRS RLILGFEELN QNLSEISVWV CFGSSRTFDW VLSSYIFGIG SKRIIPDKLT GTRIYLKPN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)