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AT4G21790.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:12514140 (2003): plant-type vacuole
  • PMID:25641898 (2015): plasma membrane
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:17151019 (2007): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : tobamovirus multiplication 1
Curator
Summary (TAIR10)
encodes a host factor that is required for TMV virus multiplication.
Computational
Description (TAIR10)
tobamovirus multiplication 1 (TOM1); INVOLVED IN: viral replication complex formation and maintenance; LOCATED IN: vacuolar membrane, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1084 (InterPro:IPR009457); BEST Arabidopsis thaliana protein match is: tobamovirus multiplication protein 3 (TAIR:AT2G02180.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:13556eggNOG:ENOG410IEVMeggNOG:ENOG41110A4EMBL:AB016924
EMBL:AB016925EMBL:AL035527EMBL:AL161555EMBL:AY046049
EMBL:AY079319EMBL:CP002687EnsemblPlants:AT4G21790EnsemblPlants:AT4G21790.1
entrez:828267GeneID:828267Genevisible:Q9FEG2GO:GO:0005774
GO:GO:0009705GO:GO:0016021GO:GO:0046786Gramene:AT4G21790.1
hmmpanther:PTHR31142hmmpanther:PTHR31142:SF6HOGENOM:HOG000239356InParanoid:Q9FEG2
IntAct:Q9FEG2InterPro:IPR009457KEGG:ath:AT4G21790OMA:HFPIESK
PaxDb:Q9FEG2Pfam:PF06454Pfam:Q9FEG2PhylomeDB:Q9FEG2
PIR:T05854PRIDE:Q9FEG2PRO:PR:Q9FEG2ProteinModelPortal:Q9FEG2
Proteomes:UP000006548RefSeq:NP_567636.1STRING:3702.AT4G21790.1TAIR:AT4G21790
tair10-symbols:ATTOM1tair10-symbols:TOM1TMHMM:TMhelixUniGene:At.24879
UniGene:At.64691UniProt:Q9FEG2
Coordinates (TAIR10) chr4:+:11569924..11572163
Molecular Weight (calculated) 33011.20 Da
IEP (calculated) 8.68
GRAVY (calculated) 0.70
Length 291 amino acids
Sequence (TAIR10)
(BLAST)
001: MTDSGLMMPA EIAGILTTAI TSWWDDVNES TQWQDGIFFA LCGAYALVSA VALVQLIRIQ MRVPEYGWTT QKVFHLMNFV VNGVRAVLFG FHMQVFLVHP
101: KALCWVLLDL PGLLFFSAYT LLVLFWAEIY HQARSLPTDK LRITYISVNV AVYLAQIGIW AYIWVHDNST VELVGKIFIA VVSFIAALGF LLYGGRLFFM
201: LRRFPIESKG RRKKLHEVGS VTAICFTCFL IRCVVVAVSA FDKDLTLDVL DHPVLNLIYY MVVEVLPSAL VLFILRKLPP KRVSAQYHPI Q
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)