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AT5G25540.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 0.995
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : CTC-interacting domain 6
Curator
Summary (TAIR10)
Expressed protein contains PAM2 PABC interacting domain.
Computational
Description (TAIR10)
CTC-interacting domain 6 (CID6); CONTAINS InterPro DOMAIN/s: Ubiquitin system component Cue (InterPro:IPR003892); BEST Arabidopsis thaliana protein match is: CTC-interacting domain 5 (TAIR:AT5G11440.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J2H1eggNOG:ENOG41114K2EMBL:AC006601EMBL:AK316708
EMBL:BT010477EMBL:CP002688EnsemblPlants:AT5G25540EnsemblPlants:AT5G25540.1
entrez:832629GeneID:832629Genevisible:Q6NQH9Gramene:AT5G25540.1
hmmpanther:PTHR37252hmmpanther:PTHR37252:SF1HOGENOM:HOG000143368InParanoid:Q6NQH9
InterPro:IPR003892KEGG:ath:AT5G25540OMA:VYLANSCPaxDb:Q6NQH9
Pfam:Q6NQH9Pfscan:PS51140PhylomeDB:Q6NQH9PRIDE:Q6NQH9
PRO:PR:Q6NQH9PROSITE:PS51140ProteinModelPortal:Q6NQH9Proteomes:UP000006548
RefSeq:NP_197936.1SMR:Q6NQH9STRING:3702.AT5G25540.1TAIR:AT5G25540
tair10-symbols:CID6UniGene:At.30902UniProt:Q6NQH9
Coordinates (TAIR10) chr5:-:8891770..8892362
Molecular Weight (calculated) 19348.30 Da
IEP (calculated) 4.13
GRAVY (calculated) -0.71
Length 175 amino acids
Sequence (TAIR10)
(BLAST)
001: MKSGSSTLNP YAAAYVPLSK REGSLVDTKP VTQQHMQQQH HQQQPYYGYG VQGMGSYQGT QMSPKKSPSE MVYNHQLKDE DLEMDMDIEY LLATYPGLSQ
101: ESINDVYLAN TCDLDATIEM LNQLEIYSTE AEEYLPDTLD IGDVPEIITE SSKQKNDGSS ASSSSGIRNA NVSSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)