AT5G25540.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:golgi 0.995 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : CTC-interacting domain 6 | ||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
Expressed protein contains PAM2 PABC interacting domain. | ||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
CTC-interacting domain 6 (CID6); CONTAINS InterPro DOMAIN/s: Ubiquitin system component Cue (InterPro:IPR003892); BEST Arabidopsis thaliana protein match is: CTC-interacting domain 5 (TAIR:AT5G11440.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr5:-:8891770..8892362 | ||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 19348.30 Da | ||||||||||||||||||||||||||||||||||||
IEP (calculated) | 4.13 | ||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.71 | ||||||||||||||||||||||||||||||||||||
Length | 175 amino acids | ||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MKSGSSTLNP YAAAYVPLSK REGSLVDTKP VTQQHMQQQH HQQQPYYGYG VQGMGSYQGT QMSPKKSPSE MVYNHQLKDE DLEMDMDIEY LLATYPGLSQ 101: ESINDVYLAN TCDLDATIEM LNQLEIYSTE AEEYLPDTLD IGDVPEIITE SSKQKNDGSS ASSSSGIRNA NVSSS |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)