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AT4G35940.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G17787.1); Has 45288 Blast hits to 24095 proteins in 1140 species: Archae - 93; Bacteria - 2895; Metazoa - 13424; Fungi - 2873; Plants - 1183; Viruses - 123; Other Eukaryotes - 24697 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JTUQeggNOG:ENOG41107HSEMBL:AL022373EMBL:AL031986
EMBL:AL161588EMBL:CP002687EnsemblPlants:AT4G35940EnsemblPlants:AT4G35940.1
entrez:829749ExpressionAtlas:O65631GeneID:829749Gramene:AT4G35940.1
hmmpanther:PTHR34660hmmpanther:PTHR34660:SF1HOGENOM:HOG000115012ncoils:Coil
OMA:RHNNNNEPhylomeDB:O65631PIR:T04704Proteomes:UP000006548
RefSeq:NP_195319.1TAIR:AT4G35940UniGene:At.2215UniProt:O65631
Coordinates (TAIR10) chr4:+:17021672..17023593
Molecular Weight (calculated) 52724.20 Da
IEP (calculated) 10.28
GRAVY (calculated) -1.54
Length 451 amino acids
Sequence (TAIR10)
(BLAST)
001: MSRCFPFPPP GYVLNGIRDE AVIVSSIKGV EEKAKKEQRR KDRRSDKKDK KDKKERKEKK EKKEKKRKER EGKEVGSEKR SHKRRRKEDG AKVDLFHKLK
101: ESEVNCLEKS SLTVERELLQ STSQNSCDST LNSNEMLPKQ KEVQQPLDGR HNNNNNEKRV EKQQPLDGRH NNNNEKRVEK QQPLDGRHNN NNEKRIEKQQ
201: PLNGRHNNNN EKLMEKQQPL NGRHNNNNEK RIEKQQPLNG RHNNKEKQKE KQQPLDVRHN NNDSESIIRI RLPIRRQKDP EVMMTNKDQE KPGPSRGIKL
301: DSSQLPTREP VNQHPCSTSA AEHASKPREE KRKDPIFRGK HGKEKISSSS TRETYQPPKS LCNCPPSMVL QFLDVVENWV PNTIERRVDL INSEDEECWW
401: SMKKPPSSTT EICKQLNREN EIKQVGNTMG WPCARLLPEA DVYALPYTVP F
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)