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AT5G48610.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 43043 Blast hits to 23768 proteins in 1327 species: Archae - 108; Bacteria - 3952; Metazoa - 17076; Fungi - 3614; Plants - 1643; Viruses - 204; Other Eukaryotes - 16446 (source: NCBI BLink).
Protein Annotations
EMBL:AK226736EMBL:CP002688EnsemblPlants:AT5G48610EnsemblPlants:AT5G48610.1
entrez:834918GeneID:834918Gramene:AT5G48610.1hmmpanther:PTHR33022
KEGG:ath:AT5G48610ncoils:CoilOMA:NGESKYVPhylomeDB:Q0WVL0
Proteomes:UP000006548RefSeq:NP_199672.2STRING:3702.AT5G48610.1TAIR:AT5G48610
UniGene:At.55436UniProt:Q0WVL0
Coordinates (TAIR10) chr5:+:19712614..19714861
Molecular Weight (calculated) 41159.40 Da
IEP (calculated) 10.18
GRAVY (calculated) -1.60
Length 354 amino acids
Sequence (TAIR10)
(BLAST)
001: MSRCFPFPPP GYEKKIRTDE ADPLVKDKYK EKKHKKDKEK REGKEKKSKD RSKDKQKERK EKKDKHKDQK DKEKGKEKGK PLEEKKAELL TNAGHRENRV
101: TDTVQNNSNG ESKYVQDLAR RIRYDEEATG SQSAQRIDHP NQKNVGITEK AFENSPIEET SHRVDDNKRI NNQKNFTAAK SSENAVSRVS FGADHKRAEV
201: MGKPMENRDQ VRQTESAEKS HRKENVTKSE KPRDQEGVKK TEAKDKDRNK EKKEEKTESI NKTRQEKPKL IRGPKLEERE KDSPDLRNCK LPDVSRTSIK
301: NLHTEGNLGK RKDHMTNGFL YGELFSDPIL CLVNEECSCH INHRMIYGLV LRSI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)