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AT2G39630.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
Predictors External Curations
AmiGO : endoplasmic reticulum 16618929
TAIR : endoplasmic reticulum 16618929
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:16618929 (2006): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Nucleotide-diphospho-sugar transferases superfamily protein
Curator
Summary (TAIR10)
Encodes a putative dolichyl-phosphate β-glucosyltransferase.
Computational
Description (TAIR10)
Nucleotide-diphospho-sugar transferases superfamily protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biosynthetic process, protein amino acid glycosylation; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 2 (InterPro:IPR001173); BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferases superfamily protein (TAIR:AT1G20575.1); Has 14679 Blast hits to 14665 proteins in 2386 species: Archae - 662; Bacteria - 10857; Metazoa - 271; Fungi - 260; Plants - 99; Viruses - 22; Other Eukaryotes - 2508 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G39630-MONOMERCAZy:GT2eggNOG:COG0463eggNOG:KOG2977
EMBL:AC004218EMBL:AY056120EMBL:AY078031EMBL:CP002685
EMBL:KJ138858EnsemblPlants:AT2G39630EnsemblPlants:AT2G39630.1entrez:818546
ExpressionAtlas:Q9SLN0Gene3D:3.90.550.10GeneID:818546GO:GO:0005783
GO:GO:0016021GO:GO:0016740Gramene:AT2G39630.1hmmpanther:PTHR10859
hmmpanther:PTHR10859:SF91HOGENOM:HOG000283250InterPro:IPR001173InterPro:IPR029044
KEGG:ath:AT2G39630KO:K00729OMA:FIRLRYMPfam:PF00535
PhylomeDB:Q9SLN0PIR:T00571Proteomes:UP000006548Reactome:R-ATH-480985
RefSeq:NP_181493.1STRING:3702.AT2G39630.1SUPFAM:SSF53448TAIR:AT2G39630
TMHMM:TMhelixUniGene:At.21026UniGene:At.67283UniProt:Q9SLN0
Coordinates (TAIR10) chr2:-:16522008..16524561
Molecular Weight (calculated) 38338.90 Da
IEP (calculated) 9.08
GRAVY (calculated) -0.02
Length 336 amino acids
Sequence (TAIR10)
(BLAST)
001: MEFLVTVAEF SLWLLLIVLF GFLSVVVFEA WRRRHSNVSV ETVTTLDDPK SIKPIPCPHI TDPAEKYLSL IVPAYNEELR LPAALEETMD YLQDRASRDK
101: SFSFEVVIVD DGSVDGTKRV AFDFIRKYTI DNIRVIPLGK NQGKGEAIRK GMLHSRGQLL LMLDADGATK VTDLEKLENQ INAVAREEYS IRNPASKDMD
201: FKIGDVQVSA FGSRAHLEEK ALATRKWYRN FLMKGFHLVV LLAAGPGIRD TQCGFKMFTR AAARRLFTNV HLKRWCFDVE LVYLCKRFNI PMVEISVKWS
301: EIPGSKVSML SIPNMLWELA LMSVGYRTGM WKIHQV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)