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AT5G23390.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.974
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30447334 (2019): plasma membrane
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:21433285 (2011): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Plant protein of unknown function (DUF639)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Plant protein of unknown function (DUF639); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF639 (InterPro:IPR006927); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF639) (TAIR:AT1G48840.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJM8eggNOG:ENOG410YFMYEMBL:AY090230EMBL:CP002688
EnsemblPlants:AT5G23390EnsemblPlants:AT5G23390.1entrez:832403GeneID:832403
GO:GO:0016021Gramene:AT5G23390.1hmmpanther:PTHR31860hmmpanther:PTHR31860:SF4
InterPro:IPR006927KEGG:ath:AT5G23390OMA:FLEFCSFPfam:PF04842
PhylomeDB:Q8RX89Proteomes:UP000006548RefSeq:NP_197730.1TAIR:AT5G23390
TMHMM:TMhelixUniGene:At.28111UniGene:At.70468UniProt:Q8RX89
Coordinates (TAIR10) chr5:-:7870719..7874283
Molecular Weight (calculated) 81783.50 Da
IEP (calculated) 8.66
GRAVY (calculated) -0.03
Length 730 amino acids
Sequence (TAIR10)
(BLAST)
001: MEEDGGGGGA KVGMLENFMK THQSSLKSLF QRKKSSSGRD GDASPSPIAS PKPIPQLSLL ANSVVSRCSK ILNIQTEDLQ HHFDVELPES VKQLLTYARN
101: FLEFCSFQAL HQVMKKPDYL SDQEFRQLMF DMMLAWETPS VTSEQENKDA ASPSKQDSED EDGWSLFYSS PTNMAMQVDE KKSVGQEAFA RIAPVCPAIA
201: DAITVHNLFD ALTSSSGHRL HYIVYDKYLR TLDKIFKAAK STLGPSAANL QLAKGEIVLD MDGANPVLPV LKHVGISAWP GKLTLTNCAL YFDSMGGGEK
301: PMRYDLTEDT KQVIKPELTG PLGARIFDKA IMYKSITVPE PVFFEFTEFK GNARRDYWLG ICLEILRVQW FIRRYNFKGI QRSEILARAI LGIFRYRAIR
401: EAFQVFSSQY KTLLIFNLAE SLPGGDMVLE ALSSRVSRIT TNVASDIGSV QYMKWPSNLS PVSLKLLEHF GLNLETGTNM GEELTIVGDF CVGETSPLEI
501: ALKQSILDTD RAEAAQATVE QVKVEGIDTN VAVMKELLLP FIKLGLHINR LAYWQDPYKS TVFMILVSYM IISGWIGFIL PSILLLVAIV MMWRKQFNKG
601: KEPKTVRVKA PPSKNAVEQL LVLQDAISQF ESLIQAVNVG LLKIRAITLA ILPQATDTTA ISLVVVAVIL AVVPVKYLIT VAFVEWFTRE VGWRKASSDR
701: LERRIREWWF RVPAAPVQLI RAEDSKKKKK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)