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AT5G10630.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.989
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Translation elongation factor EF1A/initiation factor IF2gamma family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Translation elongation factor EF1A/initiation factor IF2gamma family protein; FUNCTIONS IN: GTP binding, translation elongation factor activity, GTPase activity, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, C-terminal (InterPro:IPR004160), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (InterPro:IPR009001), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Zinc finger, RanBP2-type (InterPro:IPR001876), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: Translation elongation factor EF1A/initiation factor IF2gamma family protein (TAIR:AT1G18070.2); Has 86905 Blast hits to 86827 proteins in 18414 species: Archae - 1008; Bacteria - 36763; Metazoa - 20627; Fungi - 12842; Plants - 2029; Viruses - 6; Other Eukaryotes - 13630 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-785-MONOMERBioCyc:ARA:GQT-786-MONOMEReggNOG:COG5256eggNOG:KOG0458
EMBL:AK316695EMBL:CP002688EnsemblPlants:AT5G10630EnsemblPlants:AT5G10630.1
entrez:830928ExpressionAtlas:B9DFA5Gene3D:3.40.50.300GeneID:830928
GO:GO:0003746GO:GO:0003924GO:GO:0005525GO:GO:0008270
Gramene:AT5G10630.1hmmpanther:PTHR23115hmmpanther:PTHR23115:SF134HOGENOM:HOG000229291
InterPro:IPR000795InterPro:IPR001876InterPro:IPR004160InterPro:IPR004161
InterPro:IPR009000InterPro:IPR009001InterPro:IPR027417Pfam:PF00009
Pfam:PF03143Pfam:PF03144Pfscan:PS51722PhylomeDB:B9DFA5
PRINTS:PR00315PROSITE:PS01358PROSITE:PS51722Proteomes:UP000006548
RefSeq:NP_196625.2scanprosite:PS01358SMART:SM00547SMR:B9DFA5
STRING:3702.AT5G10630.2SUPFAM:SSF50447SUPFAM:SSF50465SUPFAM:SSF52540
SUPFAM:SSF90209TAIR:AT5G10630UniGene:At.32352UniProt:B9DFA5
Coordinates (TAIR10) chr5:+:3360561..3364414
Molecular Weight (calculated) 72302.70 Da
IEP (calculated) 6.18
GRAVY (calculated) -0.39
Length 667 amino acids
Sequence (TAIR10)
(BLAST)
001: MPRKGLSNFD DYDDGFDDDD DAFDYDYDVD IDEHEEAAAE PKEEIAKTQG LWRCAICTYD NVETMFVCDI CGVLRHPVAG NQSINKNTAP FKFDAPSPDD
101: LVSNGLTSSK TGPKGSGDAS MRQKEKQDSV EQKPLKKGGD SSETSSRGRH DKLDDKGGAG GIKSGKSLPK AKADMSNETS SSSKYMETSE SLTGTMNKMS
201: LIGETENSSD IKIRGPKSQS KHKPEEWMLL DKESDALSQL NLAIVGHVDS GKSTLSGRLL HLLGRISQKQ MHKYEKEAKL QGKGSFAYAW ALDESAEERE
301: RGITMTVAVA YFNSKRHHVV LLDSPGHKDF VPNMIAGATQ ADAAILVIDA SVGAFEAGFD NLKGQTREHA RVLRGFGVEQ VIVAINKMDI VGYSKERFDL
401: IKQHVGSFLQ SCRFKDSSLT WIPLSAMENQ NLVAAPSDNR LSSWYQGPCL LDAVDSVKSP DRDVSKPLLM PICDAVRSTS QGQVSACGKL EAGAVRPGSK
501: VMVMPSGDQG TIRSLERDSQ ACTIARAGDN VALALQGIDA NQVMAGDVLC HPDFPVSVAT HLELMVLVLE GATPILLGSQ LEFHVHHAKE AATVVKLVAM
601: LDPKTGQPTK KSPRCLTAKQ SAMLEVSLQN PVCVETFSES RALGRVFLRS SGRTVAMGKV TRIIQDS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)