suba logo
AT3G46460.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
cytosol 0.857
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ubiquitin-conjugating enzyme 13
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ubiquitin-conjugating enzyme 13 (UBC13); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin carrier protein 7 (TAIR:AT5G59300.1); Has 10290 Blast hits to 10255 proteins in 396 species: Archae - 0; Bacteria - 0; Metazoa - 4390; Fungi - 2251; Plants - 1992; Viruses - 23; Other Eukaryotes - 1634 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G46460-MONOMEREC:2.3.2.23eggNOG:COG5078eggNOG:KOG0425
EMBL:AL133298EMBL:AY050368EMBL:AY094040EMBL:CP002686
EMBL:DQ027027EMBL:U33758EnsemblPlants:AT3G46460EnsemblPlants:AT3G46460.1
entrez:823796Gene3D:3.10.110.10GeneID:823796Genevisible:Q42541
GO:GO:0004842GO:GO:0005524GO:GO:0005737GO:GO:0006511
GO:GO:0031625GO:GO:0061630Gramene:AT3G46460.1hmmpanther:PTHR24067
hmmpanther:PTHR24067:SF109HOGENOM:HOG000233454InParanoid:Q42541InterPro:IPR000608
InterPro:IPR016135InterPro:IPR023313KEGG:ath:AT3G46460KO:K10575
OMA:MINDDCKPaxDb:Q42541Pfam:PF00179Pfam:Q42541
Pfscan:PS50127PhylomeDB:Q42541PIR:T45703PRIDE:Q42541
PRO:PR:Q42541PROSITE:PS00183PROSITE:PS50127ProteinModelPortal:Q42541
Proteomes:UP000006548RefSeq:NP_566884.1scanprosite:PS00183SMR:Q42541
STRING:3702.AT3G46460.1SUPFAM:SSF54495TAIR:AT3G46460tair10-symbols:UBC13
UniGene:At.24542UniPathway:UPA00143UniProt:Q42541
Coordinates (TAIR10) chr3:-:17096120..17097315
Molecular Weight (calculated) 18823.40 Da
IEP (calculated) 5.26
GRAVY (calculated) -0.42
Length 166 amino acids
Sequence (TAIR10)
(BLAST)
001: MNSQACLLLQ KQLKDLCKHP VDGFSAGLVD EKNIFEWSVT IIGPPDTLYE GGFFYAIMSF PQNYPNSPPT VRFTSDIWHP NVYPDGRVCI SILHPPGDDP
101: SGYELASERW TPVHTVESIM LSIISMLSGP NDESPANVEA AKEWREKRDE FKKKVSRCVR KSQEMF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)