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AT5G59300.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
peroxisome 0.954
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ubiquitin carrier protein 7
Curator
Summary (TAIR10)
ubiquitin conjugating enzyme E2
Computational
Description (TAIR10)
ubiquitin carrier protein 7 (UBC7); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin-conjugating enzyme 13 (TAIR:AT3G46460.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G59300-MONOMEREC:2.3.2.23eggNOG:COG5078eggNOG:KOG0425
EMBL:AB016890EMBL:AY080733EMBL:BT005798EMBL:CP002688
EMBL:U33757EnsemblPlants:AT5G59300EnsemblPlants:AT5G59300.1entrez:836048
Gene3D:3.10.110.10GeneID:836048Genevisible:Q42540GO:GO:0005524
GO:GO:0016567GO:GO:0016740Gramene:AT5G59300.1hmmpanther:PTHR24067
hmmpanther:PTHR24067:SF109HOGENOM:HOG000233454InParanoid:Q42540InterPro:IPR000608
InterPro:IPR016135InterPro:IPR023313KEGG:ath:AT5G59300KO:K10575
PaxDb:Q42540Pfam:PF00179Pfam:Q42540Pfscan:PS50127
PhylomeDB:Q42540PIR:S71209PRIDE:Q42540PRO:PR:Q42540
PROSITE:PS00183PROSITE:PS50127ProteinModelPortal:Q42540Proteomes:UP000006548
RefSeq:NP_568902.2scanprosite:PS00183SMR:Q42540STRING:3702.AT5G59300.1
SUPFAM:SSF54495TAIR:AT5G59300tair10-symbols:ATUBC7tair10-symbols:UBC7
UniGene:At.43359UniPathway:UPA00143UniProt:Q42540
Coordinates (TAIR10) chr5:-:23919868..23921304
Molecular Weight (calculated) 22814.10 Da
IEP (calculated) 6.51
GRAVY (calculated) -0.40
Length 203 amino acids
Sequence (TAIR10)
(BLAST)
001: MCSHNENIDS RKFTKSEPCH IKKISISILS ISLSSSSMAS QASLLLQKQL KDLCKHPVDG FSAGLVDEKN IFEWSVTIIG PPDTLYEGGF FNAIMTFPQN
101: YPNSPPTVRF TSDMWHPNVY SDGRVCISIL HPPGDDPSGY ELASERWTPV HTVESIMLSI ISMLSGPNDE SPANVEAAKE WRDKRDEFKK KVSRCVRKSQ
201: EMF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)