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AT2G24860.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : DnaJ/Hsp40 cysteine-rich domain superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DnaJ/Hsp40 cysteine-rich domain superfamily protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein DnaJ, cysteine-rich domain (InterPro:IPR001305); Has 124 Blast hits to 124 proteins in 32 species: Archae - 0; Bacteria - 8; Metazoa - 7; Fungi - 2; Plants - 95; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IZ2UeggNOG:ENOG4111WZVEMBL:AC006585EMBL:AF410290
EMBL:AK176284EMBL:AY088871EMBL:AY097372EMBL:CP002685
EnsemblPlants:AT2G24860EnsemblPlants:AT2G24860.1entrez:817023GeneID:817023
Gramene:AT2G24860.1hmmpanther:PTHR15852hmmpanther:PTHR15852:SF13HOGENOM:HOG000153500
IntAct:Q9SK46InterPro:IPR001305KEGG:ath:AT2G24860OMA:CSGKGFA
PhylomeDB:Q9SK46PIR:D84641Proteomes:UP000006548RefSeq:NP_565578.1
SMR:Q9SK46STRING:3702.AT2G24860.1SUPFAM:SSF57938TAIR:AT2G24860
UniGene:At.13979UniProt:Q9SK46
Coordinates (TAIR10) chr2:-:10587118..10588240
Molecular Weight (calculated) 15466.60 Da
IEP (calculated) 8.57
GRAVY (calculated) -0.07
Length 144 amino acids
Sequence (TAIR10)
(BLAST)
001: MTICMCCDSH LVAKSILNPW NSPRITKLGF VPVVRRFPAT TTVKASAVDS PESSSNFAKR MDQAWIISQQ PSPVGCSSCN SKGHVECKWC AGTGFFILGD
101: NMLCQVPSRN TSCVICSGQG SASCSDCKGT GFRAKWLEKP PVPT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)