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AT3G49690.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : myb domain protein 84
Curator
Summary (TAIR10)
Putative homolog of the Blind gene in tomato. Together with RAX1 and RAX3 belong to the class R2R3 MYB genes; encoded by the Myb-like transcription factor MYB84, regulates axillary meristem formation.
Computational
Description (TAIR10)
myb domain protein 84 (MYB84); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 68 (TAIR:AT5G65790.1); Has 8670 Blast hits to 8092 proteins in 466 species: Archae - 0; Bacteria - 0; Metazoa - 690; Fungi - 404; Plants - 5917; Viruses - 3; Other Eukaryotes - 1656 (source: NCBI BLink).
Protein Annotations
BioGrid:9449eggNOG:COG5147eggNOG:KOG0048EMBL:AL132965
EMBL:AY519597EMBL:BT029224EMBL:CP002686EMBL:EF598660
EMBL:EF598661EMBL:EF598662EMBL:EF598663EMBL:EF598664
EMBL:EF598665EMBL:EF598666EMBL:EF598667EMBL:EF598668
EMBL:EF598669EMBL:EF598670EMBL:EF598671EMBL:EF598672
EMBL:EF598673EMBL:EF598674EMBL:EF598675EMBL:EF598676
EMBL:EF598677EMBL:EF598678EMBL:EF598679EMBL:EF598680
EMBL:EF598681EMBL:EF598682EMBL:EF598683EnsemblPlants:AT3G49690
EnsemblPlants:AT3G49690.1entrez:824131Gene3D:1.10.10.60GeneID:824131
Genevisible:Q9M2Y9GO:GO:0003677GO:GO:0003700GO:GO:0005634
GO:GO:0006351GO:GO:0007275GO:GO:0009751Gramene:AT3G49690.1
hmmpanther:PTHR10641hmmpanther:PTHR10641:SF654HOGENOM:HOG000237600InParanoid:Q9M2Y9
IntAct:Q9M2Y9InterPro:IPR001005InterPro:IPR009057InterPro:IPR017930
KEGG:ath:AT3G49690KO:K09422ncoils:CoilOMA:TMFTWPL
PaxDb:Q9M2Y9Pfam:PF00249Pfam:Q9M2Y9Pfscan:PS51294
PhylomeDB:Q9M2Y9PIR:T46035PRO:PR:Q9M2Y9PROSITE:PS51294
ProteinModelPortal:Q9M2Y9Proteomes:UP000006548RefSeq:NP_190538.1SMART:SM00717
SMR:Q9M2Y9STRING:3702.AT3G49690.1SUPFAM:SSF46689TAIR:AT3G49690
tair10-symbols:ATMYB84tair10-symbols:MYB84tair10-symbols:RAX3UniGene:At.742
UniProt:Q9M2Y9
Coordinates (TAIR10) chr3:+:18427941..18429100
Molecular Weight (calculated) 35580.10 Da
IEP (calculated) 7.31
GRAVY (calculated) -0.70
Length 310 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRAPCCDKA NVKKGPWSPE EDAKLKSYIE NSGTGGNWIA LPQKIGLKRC GKSCRLRWLN YLRPNIKHGG FSEEEENIIC SLYLTIGSRW SIIAAQLPGR
101: TDNDIKNYWN TRLKKKLINK QRKELQEACM EQQEMMVMMK RQHQQQQIQT SFMMRQDQTM FTWPLHHHNV QVPALFMNQT NSFCDQEDVK PVLIKNMVKI
201: EDQELEKTNP HHHQDSMTNA FDHLSFSQLL LDPNHNHLGS GEGFSMNSIL SANTNSPLLN TSNDNQWFGN FQAETVNLFS GASTSTSADQ STISWEDISS
301: LVYSDSKQFF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)